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7XLF
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BU of 7xlf by Molmil
Crystal structure of CH3-THF complex of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6
分子名称: 5,10-methylenetetrahydrofolate reductase, 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Yu, H.Y, Senda, M, Senda, T.
登録日2022-04-21
公開日2023-04-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structural of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6
To Be Published
5XNY
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BU of 5xny by Molmil
Crystal structure of CreD
分子名称: CreD
著者Katsuyama, Y, Sato, Y, Sugai, Y, Higashiyama, Y, Senda, M, Senda, T, Ohnishi, Y.
登録日2017-05-25
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination
FEBS J., 285, 2018
5XNZ
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BU of 5xnz by Molmil
Crystal structure of CreD complex with fumarate
分子名称: CreD, FUMARIC ACID
著者Katsuyama, Y, Sato, Y, Sugai, Y, Higashiyama, Y, Senda, M, Senda, T, Ohnishi, Y.
登録日2017-05-25
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination
FEBS J., 285, 2018
6K4H
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BU of 6k4h by Molmil
Crystal structure of the PI5P4Kbeta-AMPPNP complex
分子名称: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
著者Takeuchi, K, Senda, M, Senda, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 2022
6K4G
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BU of 6k4g by Molmil
Crystal structure of the PI5P4Kbeta-GMPPNP complex
分子名称: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
著者Takeuchi, K, Senda, M, Senda, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 2022
1KR6
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BU of 1kr6 by Molmil
Thermolysin complexed with Z-D-Glutamic acid (benzyloxycarbonyl-D-Glutamic acid)
分子名称: CALCIUM ION, D-GLUTAMIC ACID, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2002-01-09
公開日2003-01-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KS7
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BU of 1ks7 by Molmil
Thermolysin complexed with Z-D-Aspartic acid (benzyloxycarbonyl-D-Aspartic acid)
分子名称: CALCIUM ION, D-ASPARTIC ACID, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2002-01-11
公開日2003-01-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KKK
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BU of 1kkk by Molmil
Thermolysin complexed with Z-L-Aspartic Acid (benzyloxycarbonyl-L-Aspartic Acid)
分子名称: ASPARTIC ACID, CALCIUM ION, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-12-10
公開日2002-12-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KL6
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BU of 1kl6 by Molmil
Thermolysin complexed with Z-L-Alanine (benzyloxycarbonyl-L-Alanine)
分子名称: ALANINE, CALCIUM ION, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-12-11
公開日2002-12-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure analyses of Thermolysin in complex with its inhibitors.
To be Published
1KTO
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BU of 1kto by Molmil
Thermolysin complexed with Z-D-Alanine (benzyloxycarbonyl-D-Alanine)
分子名称: CALCIUM ION, D-ALANINE, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2002-01-17
公開日2003-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KEI
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BU of 1kei by Molmil
Thermolysin (substrate-free)
分子名称: CALCIUM ION, LYSINE, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-11-16
公開日2002-11-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors
To be Published
1KJO
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BU of 1kjo by Molmil
Thermolysin complexed with Z-L-Threonine (benzyloxycarbonyl-L-Threonine)
分子名称: CALCIUM ION, THREONINE, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-12-05
公開日2002-12-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of Thermolysin in complex with its inhibitors
To be Published
1KRO
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BU of 1kro by Molmil
Thermolysin complexed with Z-D-Threonine (benzyloxycarbonyl-D-Threonine)
分子名称: CALCIUM ION, D-THREONINE, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2002-01-10
公開日2003-01-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KJP
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BU of 1kjp by Molmil
Thermolysin complexed with Z-L-Glutamic acid (benzyloxycarbonyl-L-Glutamic acid)
分子名称: CALCIUM ION, GLUTAMIC ACID, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-12-05
公開日2002-12-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors
To be Published
5X1N
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BU of 5x1n by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex form
分子名称: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Harada, A, Senda, T.
登録日2017-01-26
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
6KNF
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BU of 6knf by Molmil
CryoEM map and model of Nitrite Reductase at pH 6.2
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
登録日2019-08-05
公開日2020-08-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
5X1I
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BU of 5x1i by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, substrate free form
分子名称: 1,2-ETHANEDIOL, Vanillate/3-O-methylgallate O-demethylase
著者Harada, A, Senda, T.
登録日2017-01-26
公開日2017-05-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1M
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BU of 5x1m by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex form
分子名称: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Harada, A, Senda, T.
登録日2017-01-26
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
6KNG
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BU of 6kng by Molmil
CryoEM map and model of Nitrite Reductase at pH 8.1
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
登録日2019-08-05
公開日2020-08-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
6KFQ
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BU of 6kfq by Molmil
Crystal structure of thermophilic rhodopsin from Rubrobacter xylanophilus
分子名称: RETINAL, Rhodopsin, SULFATE ION, ...
著者Suzuki, K, Akiyama, T, Hayashi, T, Yasuda, S, Kanehara, K, Kojima, K, Tanabe, M, Kato, R, Senda, T, Sudo, Y, Kinoshita, M, Murata, T.
登録日2019-07-08
公開日2020-04-08
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?
J.Phys.Chem.B, 124, 2020
5X1J
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BU of 5x1j by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, vanillate complex form
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-HYDROXY-3-METHOXYBENZOATE, ...
著者Harada, A, Senda, T.
登録日2017-01-26
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1K
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BU of 5x1k by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, 3-O-methylgallate complex form
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-methoxy-4,5-bis(oxidanyl)benzoic acid, ...
著者Harada, A, Senda, T.
登録日2017-01-26
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
7EXZ
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BU of 7exz by Molmil
DgpB-DgpC complex apo 2.5 angstrom
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
著者Mori, T, Senda, M, Senda, T, Abe, I.
登録日2021-05-29
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7EXB
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BU of 7exb by Molmil
DfgA-DfgB complex apo 2.4 angstrom
分子名称: DfgB, MANGANESE (II) ION, SULFATE ION, ...
著者Mori, T, Senda, M, Senda, T, Abe, I.
登録日2021-05-26
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7EBV
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BU of 7ebv by Molmil
Crystal structure of Aedes aegypti Noppera-bo, glutathione S-transferase epsilon 8, in luteolin- and glutathione-bound form
分子名称: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, CALCIUM ION, GLUTATHIONE, ...
著者Inaba, K, Koiwai, K, Senda, M, Senda, T, Niwa, R.
登録日2021-03-11
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular action of larvicidal flavonoids on ecdysteroidogenic glutathione S-transferase Noppera-bo in Aedes aegypti.
Bmc Biol., 20, 2022

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