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7YQ7
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Crystal structure of photosystem II expressing psbA3 gene only
分子名称: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Nakajima, Y, Suga, M, Shen, J.R.
登録日2022-08-05
公開日2022-11-30
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of photosystem II from a cyanobacterium expressing psbA 2 in comparison to psbA 3 reveal differences in the D1 subunit.
J.Biol.Chem., 298, 2022
8HX6
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Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae
分子名称: 4-amino-4-deoxychorismate synthase, D-MALATE, MAGNESIUM ION, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX7
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Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with L-glutamine
分子名称: 4-amino-4-deoxychorismate synthase, CHLORIDE ION, MAGNESIUM ION, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX9
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Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae with chorismate
分子名称: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, 4-amino-4-deoxychorismate synthase, FORMIC ACID, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX8
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Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with chorismate
分子名称: 4-amino-4-deoxychorismate synthase, MAGNESIUM ION, SUCCINIC ACID, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8IDQ
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Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus with xylose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
登録日2023-02-14
公開日2023-05-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
8IDP
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Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
著者Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
登録日2023-02-14
公開日2023-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
2Z2E
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Crystal Structure of Canine Milk Lysozyme Stabilized against Non-enzymatic Deamidation
分子名称: Lysozyme C, milk isozyme, SULFATE ION
著者Nonaka, Y, Akieda, D, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K.
登録日2007-05-21
公開日2007-11-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins, 72, 2008
1WSF
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Co-crystal structure of E.coli RNase HI active site mutant (D134A*) with Mn2+
分子名称: MANGANESE (II) ION, Ribonuclease HI
著者Tsunaka, Y, Takano, K, Matsumura, H, Yamagata, Y, Kanaya, S.
登録日2004-11-05
公開日2005-02-08
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography
J.Mol.Biol., 345, 2005
1WSE
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BU of 1wse by Molmil
Co-crystal structure of E.coli RNase HI active site mutant (E48A*) with Mn2+
分子名称: MANGANESE (II) ION, Ribonuclease HI
著者Tsunaka, Y, Takano, K, Matsumura, H, Yamagata, Y, Kanaya, S.
登録日2004-11-05
公開日2005-02-08
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography
J.Mol.Biol., 345, 2005
1WSG
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BU of 1wsg by Molmil
Co-crystal structure of E.coli RNase HI active site mutant (E48A/D134N*) with Mn2+
分子名称: MANGANESE (II) ION, Ribonuclease HI
著者Tsunaka, Y, Takano, K, Matsumura, H, Yamagata, Y, Kanaya, S.
登録日2004-11-05
公開日2005-02-08
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography
J.Mol.Biol., 345, 2005
7YBC
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BU of 7ybc by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
分子名称: (2~{S})-2-methyl-2-oxidanyl-4-oxidanylidene-pentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
著者Nakashima, Y, Brewitz, L, Schofield, C.J.
登録日2022-06-29
公開日2023-07-05
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published
7YB8
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Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
分子名称: (2R)-2-hydroxypentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
著者Nakashima, Y, Brewitz, L, Schofield, C.J.
登録日2022-06-29
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published
7YBB
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BU of 7ybb by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-4-hydroxy-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
分子名称: (2~{R})-2-oxidanyl-4-oxidanylidene-pentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
著者Nakashima, Y, Brewitz, L, Schofield, C.J.
登録日2022-06-29
公開日2023-07-05
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-4-hydroxy-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published
7YBA
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BU of 7yba by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-4-hydroxy-2-oxoglutarate
分子名称: (2~{R})-2-oxidanyl-4-oxidanylidene-pentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, MANGANESE (II) ION
著者Nakashima, Y, Brewitz, L, Schofield, C.J.
登録日2022-06-29
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-4-hydroxy-2-oxoglutarate
To Be Published
7YB9
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Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with L-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
分子名称: (2S)-2-HYDROXYPENTANEDIOIC ACID, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
著者Nakashima, Y, Brewitz, L, Schofield, C.J.
登録日2022-06-29
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with L-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published
1IS2
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BU of 1is2 by Molmil
Crystal Structure of Peroxisomal Acyl-CoA Oxidase-II from Rat Liver
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, acyl-CoA oxidase
著者Nakajima, Y, Miyahara, I, Hirotsu, K.
登録日2001-11-07
公開日2002-04-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three-dimensional structure of the flavoenzyme acyl-CoA oxidase-II from rat liver, the peroxisomal counterpart of mitochondrial acyl-CoA dehydrogenase.
J.Biochem., 131, 2002
1X0J
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BU of 1x0j by Molmil
Crystal structure analysis of the N-terminal bromodomain of human Brd2
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bromodomain-containing protein 2
著者Nakamura, Y, Umehara, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-03-23
公開日2006-06-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for acetylated histone H4 recognition by the human Brd2 bromodomain
To be Published
1V93
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5,10-Methylenetetrahydrofolate Reductase from Thermus thermophilus HB8
分子名称: 1,4-DIETHYLENE DIOXIDE, 5,10-Methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE
著者Nakajima, Y, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-20
公開日2004-02-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of 5,10-Methylenetetrahydrofolate reductase from Thermus thermophilus HB8
To be Published
7VKF
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Reduced enzyme of FAD-dpendent Glucose Dehydrogenase complex with D-glucono-1,5-lactone at pH8.5
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, D-glucono-1,5-lactone, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, ...
著者Nakajima, Y, Nishiya, Y, Ito, K.
登録日2021-09-29
公開日2022-10-05
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5
To Be Published
7VKD
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Reduced enzyme of FAD-dpendent Glucose Dehydrogenase at pH6.5
分子名称: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, GMC oxidoreductase
著者Nakajima, Y, Nishiya, Y, Ito, K.
登録日2021-09-29
公開日2022-10-05
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5
To Be Published
7VZS
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FAD-dpendent Glucose Dehydrogenase complexed with an inhibitor at pH7.56
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, D-glucal, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Nakajima, Y.
登録日2021-11-16
公開日2022-11-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5
To Be Published
7VZP
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BU of 7vzp by Molmil
FAD-dpendent Glucose Dehydrogenase from Aspergillus oryzae
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GMC oxidoreductase, PENTAETHYLENE GLYCOL
著者Nakajima, Y.
登録日2021-11-16
公開日2022-11-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5
To Be Published
2ECF
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BU of 2ecf by Molmil
Crystal Structure of Dipeptidyl Aminopeptidase IV from Stenotrophomonas maltophilia
分子名称: Dipeptidyl peptidase IV
著者Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-02-13
公開日2008-02-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dipeptidyl aminopeptidase IV from Stenotrophomonas maltophilia exhibits activity against a substrate containing a 4-hydroxyproline residue
J.Bacteriol., 190, 2008
2DZO
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BU of 2dzo by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
分子名称: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
著者Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-29
公開日2007-10-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
To be Published

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