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3A75
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Crystal structure of glutamate complex of halotolerant γ-glutamyltranspeptidase from Bacillus subtilis
分子名称: GLUTAMIC ACID, Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain
著者Wada, K, Fukuyama, K.
登録日2009-09-14
公開日2010-03-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of the halotolerant gamma-glutamyltranspeptidase from Bacillus subtilis in complex with glutamate reveals a unique architecture of the solvent-exposed catalytic pocket
Febs J., 277, 2010
2Z8K
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BU of 2z8k by Molmil
Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Acivicin
分子名称: (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID, Gamma-glutamyltranspeptidase
著者Wada, K, Irie, M, Fukuyama, K.
登録日2007-09-05
公開日2008-06-24
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
1IVJ
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BU of 1ivj by Molmil
Crystal Structure of Rat Hemeoxygenase-1 in Complex with Heme and Azide.
分子名称: AZIDE ION, Hemeoxygenase-1, PROTOPORPHYRIN IX CONTAINING FE
著者Sugishima, M, Sakamoto, H, Omata, Y, Hayashi, S, Noguchi, M, Fukuyama, K.
登録日2002-03-18
公開日2002-12-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme Bound to Azide. IMPLICATION FOR REGIOSPECIFIC HYDROXYLATION OF HEME AT THE alpha -MESO CARBON
J.Biol.Chem., 277, 2002
3AJG
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BU of 3ajg by Molmil
Crystal structure of PcyA V225D-biliverdin IX alpha complex
分子名称: BILIVERDINE IX ALPHA, Phycocyanobilin:ferredoxin oxidoreductase
著者Wada, K, Hagiwara, Y, Fukuyama, K.
登録日2010-06-05
公開日2011-03-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献One residue substitution in PcyA leads to unexpected changes in tetrapyrrole substrate binding.
Biochem.Biophys.Res.Commun., 402, 2010
3AJH
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BU of 3ajh by Molmil
Crystal structure of PcyA V225D-biliverdin XIII alpha complex
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-2-ylidene]methy l]-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Phycocyanobilin:ferredoxin oxidoreductase
著者Wada, K, Hagiwara, Y, Fukuyama, K.
登録日2010-06-05
公開日2011-03-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献One residue substitution in PcyA leads to unexpected changes in tetrapyrrole substrate binding.
Biochem.Biophys.Res.Commun., 402, 2010
2D2A
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BU of 2d2a by Molmil
Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters
分子名称: SufA protein
著者Wada, K, Hasegawa, Y, Gong, Z, Minami, Y, Fukuyama, K, Takahashi, Y.
登録日2005-09-05
公開日2005-12-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of Escherichia coli SufA involved in biosynthesis of iron-sulfur clusters: Implications for a functional dimer
Febs Lett., 579, 2005
2D3W
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Crystal Structure of Escherichia coli SufC, an ATPase compenent of the SUF iron-sulfur cluster assembly machinery
分子名称: Probable ATP-dependent transporter sufC
著者Kitaoka, S, Wada, K, Hasegawa, Y, Minami, Y, Takahashi, Y, Fukuyama, K.
登録日2005-10-03
公開日2006-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
Febs Lett., 580, 2006
2DG5
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Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione
分子名称: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
著者Okada, T, Wada, K, Fukuyama, K.
登録日2006-03-08
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2E0K
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Crystal structure of CbiL, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
分子名称: Precorrin-2 C20-methyltransferase
著者Wada, K, Fukuyama, K.
登録日2006-10-10
公開日2007-01-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
1DVG
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BU of 1dvg by Molmil
CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME; SELELENO-METHIONINE DERIVATIVE, MUTATED AT M51T,M93L,M155L,M191L.
分子名称: HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
著者Sugishima, M, Omata, Y, Kakuta, Y, Sakamoto, H, Noguchi, M, Fukuyama, K.
登録日2000-01-20
公開日2000-04-12
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
2E7E
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Bent-binding of cyanide to the heme iron in rat heme oxygenase-1
分子名称: CYANIDE ION, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
著者Sugishima, M, Fukuyama, K.
登録日2007-01-09
公開日2007-06-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Alternative cyanide-binding modes to the haem iron in haem oxygenase
Acta Crystallogr.,Sect.F, 63, 2007
2DKE
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BU of 2dke by Molmil
Crystal structure of substrate-free form of PcyA
分子名称: CHLORIDE ION, Phycocyanobilin:ferredoxin oxidoreductase
著者Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
登録日2006-04-10
公開日2006-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
Febs Lett., 580, 2006
2ZVU
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BU of 2zvu by Molmil
Crystal structure of rat heme oxygenase-1 in complex with ferrous verdoheme
分子名称: 5-OXA-PROTOPORPHYRIN IX CONTAINING FE, FORMIC ACID, Heme oxygenase 1
著者Sato, H, Sugishima, M, Fukuyama, K, Noguchi, M.
登録日2008-11-21
公開日2009-02-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of rat haem oxygenase-1 in complex with ferrous verdohaem: presence of a hydrogen-bond network on the distal side
Biochem.J., 419, 2009
2ZXL
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BU of 2zxl by Molmil
Crystal structure of red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: Red chlorophyll catabolite reductase, chloroplastic, SODIUM ION, ...
著者Sugishima, M, Kitamori, Y, Fukuyama, K.
登録日2008-12-29
公開日2009-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of red chlorophyll catabolite reductase: enlargement of the ferredoxin-dependent bilin reductase family
J.Mol.Biol., 389, 2009
3AGA
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BU of 3aga by Molmil
Crystal structure of RCC-bound red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: 3-{(2Z,3S,4S)-5-[(Z)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-2-[(5R)-2-[(3-ethyl-5-formyl-4-methyl-1H-pyrrol-2-yl)methyl]-5-(methoxycarbonyl)-3-methyl-4-oxo-4,5-dihydrocyclopenta[b]pyrrol-6(1H)-ylidene]-4-methyl-3,4-dihydro-2H-pyrrol-3-yl}propanoic acid, Red chlorophyll catabolite reductase, chloroplastic, ...
著者Sugishima, M, Fukuyama, K.
登録日2010-03-30
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction
J.Mol.Biol., 402, 2010
3AGC
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F218V mutant of the substrate-bound red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: 3-{(2Z,3S,4S)-5-[(Z)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-2-[(5R)-2-[(3-ethyl-5-formyl-4-methyl-1H-pyrrol-2-yl)methyl]-5-(methoxycarbonyl)-3-methyl-4-oxo-4,5-dihydrocyclopenta[b]pyrrol-6(1H)-ylidene]-4-methyl-3,4-dihydro-2H-pyrrol-3-yl}propanoic acid, Red chlorophyll catabolite reductase, chloroplastic, ...
著者Sugishima, M, Fukuyama, K.
登録日2010-03-30
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction
J.Mol.Biol., 402, 2010
2ZXK
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BU of 2zxk by Molmil
Crystal structure of SeMet-Red chlorophyll catabolite reductase
分子名称: Red chlorophyll catabolite reductase, chloroplastic, SODIUM ION
著者Sugishima, M, Kitamori, Y, Fukuyama, K.
登録日2008-12-29
公開日2009-05-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of red chlorophyll catabolite reductase: enlargement of the ferredoxin-dependent bilin reductase family
J.Mol.Biol., 389, 2009
2D1E
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BU of 2d1e by Molmil
Crystal structure of PcyA-biliverdin complex
分子名称: BILIVERDINE IX ALPHA, Phycocyanobilin:ferredoxin oxidoreductase, SODIUM ION
著者Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
登録日2005-08-17
公開日2006-01-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin
Proc.Natl.Acad.Sci.Usa, 103, 2006
3AGB
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F218V mutant of the substrate-free form of red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: Red chlorophyll catabolite reductase, chloroplastic, SODIUM ION
著者Sugishima, M, Fukuyama, K.
登録日2010-03-30
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction
J.Mol.Biol., 402, 2010
2DY5
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Crystal structure of rat heme oxygenase-1 in complex with heme and 2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-1,3-dioxolane
分子名称: 1-({2-[2-(4-CHLOROPHENYL)ETHYL]-1,3-DIOXOLAN-2-YL}METHYL)-1H-IMIDAZOLE, CHLORIDE ION, Heme oxygenase 1, ...
著者Sugishima, M, Takahashi, H, Fukuyama, K.
登録日2006-09-06
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase
Biochemistry, 46, 2007
4MEC
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BU of 4mec by Molmil
Crystal structure of RAT Heme oxygenase-1 in complex with ZN(II)-Protoporphyrin IX
分子名称: Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING ZN
著者Sugishima, M.
登録日2013-08-26
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Distal regulation of heme binding of heme oxygenase-1 mediated by conformational fluctuations
Biochemistry, 54, 2015
1FXI
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STRUCTURE OF THE [2FE-2S] FERREDOXIN I FROM THE BLUE-GREEN ALGA APHANOTHECE SACRUM AT 2.2 ANGSTROMS RESOLUTION
分子名称: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN I
著者Tsukihara, T.
登録日1990-08-28
公開日1991-10-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the [2Fe-2S] ferredoxin I from the blue-green alga Aphanothece sacrum at 2.2 A resolution.
J.Mol.Biol., 216, 1990
5B3T
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Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
分子名称: Biliverdin reductase, PHOSPHATE ION
著者Takao, H, Wada, K.
登録日2016-03-12
公開日2017-02-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3V
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Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
分子名称: BILIVERDINE IX ALPHA, Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Takao, H, Wada, K.
登録日2016-03-13
公開日2017-02-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.594 Å)
主引用文献A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3U
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Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
分子名称: Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION
著者Takao, H, Wada, K.
登録日2016-03-13
公開日2017-02-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.698 Å)
主引用文献A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017

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