Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8DM0
DownloadVisualize
BU of 8dm0 by Molmil
Cryo-EM structure of SARS-CoV-2 D614G spike protein in complex with VH ab6 (focused refinement of NTD and VH ab6)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, VH ab6
著者Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S.
登録日2022-07-08
公開日2022-08-31
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization.
Nat Commun, 13, 2022
8DLI
DownloadVisualize
BU of 8dli by Molmil
Cryo-EM structure of SARS-CoV-2 Alpha (B.1.1.7) spike protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S.
登録日2022-07-08
公開日2022-08-31
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.56 Å)
主引用文献SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization.
Nat Commun, 13, 2022
8DLL
DownloadVisualize
BU of 8dll by Molmil
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S.
登録日2022-07-08
公開日2022-08-31
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.56 Å)
主引用文献SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization.
Nat Commun, 13, 2022
8DLQ
DownloadVisualize
BU of 8dlq by Molmil
Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike glycoprotein
著者Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S.
登録日2022-07-08
公開日2022-08-31
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization.
Nat Commun, 13, 2022
8DLZ
DownloadVisualize
BU of 8dlz by Molmil
Cryo-EM structure of SARS-CoV-2 D614G spike protein in complex with VH ab6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S.
登録日2022-07-08
公開日2022-08-31
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization.
Nat Commun, 13, 2022
6JEG
DownloadVisualize
BU of 6jeg by Molmil
Crystal structure of calcium free human gelsolin amyloid mutant G167R
分子名称: GLYCEROL, Gelsolin
著者Zorgati, H, Robinson, R.C.
登録日2019-02-05
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.975 Å)
主引用文献The role of gelsolin domain 3 in familial amyloidosis (Finnish type).
Proc.Natl.Acad.Sci.USA, 116, 2019
8JXZ
DownloadVisualize
BU of 8jxz by Molmil
Chitin binding SusD-like protein AqSusD in complex with (GlcNAc)3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SusD-like protein AqSusD
著者Yang, J.
登録日2023-07-01
公開日2023-11-01
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights of a SusD-like protein in marine Bacteroidetes bacteria reveal the molecular basis for chitin recognition and acquisition.
Febs J., 291, 2024
6JCO
DownloadVisualize
BU of 6jco by Molmil
Crystal structure of calcium free human gelsolin amyloid mutant D187N
分子名称: Gelsolin
著者Zorgati, H, Robinson, R.C.
登録日2019-01-29
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献The role of gelsolin domain 3 in familial amyloidosis (Finnish type).
Proc.Natl.Acad.Sci.USA, 116, 2019
7SSK
DownloadVisualize
BU of 7ssk by Molmil
Human P300 complexed with a glycine-based inhibitor
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Histone acetyltransferase p300, ...
著者Shewchuk, L.M, Reid, R.A.
登録日2021-11-11
公開日2022-11-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening.
J.Med.Chem., 65, 2022
7SZQ
DownloadVisualize
BU of 7szq by Molmil
Human P300 complexed with an azaindazole inhibitor
分子名称: 1-[1-(4-chlorophenyl)cyclopentane-1-carbonyl]-N-1H-pyrazolo[4,3-b]pyridin-5-yl-D-prolinamide, Histone acetyltransferase p300
著者Shewchuk, L.M, Reid, R.A.
登録日2021-11-29
公開日2022-11-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening.
J.Med.Chem., 65, 2022
7SS8
DownloadVisualize
BU of 7ss8 by Molmil
Human P300 complexed with a proline-based inhibitor
分子名称: 1,2-ETHANEDIOL, 1-[1-(4-chlorophenyl)cyclopentane-1-carbonyl]-N-{[3-(methylcarbamoyl)phenyl]methyl}-D-prolinamide, Histone acetyltransferase p300, ...
著者Shewchuk, L.M, Reid, R.A.
登録日2021-11-10
公開日2022-11-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening.
J.Med.Chem., 65, 2022
8T62
DownloadVisualize
BU of 8t62 by Molmil
Solution NMR structure of designed peptide BH21 (TMIEDPEAGHFHTSSA)
分子名称: Designed peptide BH21
著者McShan, A.C, Torres, M.P.
登録日2023-06-15
公開日2023-06-28
最終更新日2024-09-18
実験手法SOLUTION NMR
主引用文献Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 123, 2024
8T61
DownloadVisualize
BU of 8t61 by Molmil
Solution NMR structure of designed peptide BH33 (RHYYKFNSTGRHYHYY)
分子名称: Designed peptide BH33
著者McShan, A.C, Torres, M.P.
登録日2023-06-15
公開日2023-06-28
最終更新日2024-09-18
実験手法SOLUTION NMR
主引用文献Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 123, 2024
8T63
DownloadVisualize
BU of 8t63 by Molmil
Solution NMR structure of designed peptide PH1 (WHMWNTVPNAKQVIAA)
分子名称: Designed peptide PH1
著者McShan, A.C, Torres, M.P.
登録日2023-06-15
公開日2023-06-28
最終更新日2024-09-18
実験手法SOLUTION NMR
主引用文献Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 123, 2024
3GHW
DownloadVisualize
BU of 3ghw by Molmil
Human dihydrofolate reductase inhibitor complex
分子名称: Dihydrofolate reductase, N-({4-[(2-amino-6-methyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-5-yl)sulfanyl]phenyl}carbonyl)-L-glutamic acid, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Cody, V.
登録日2009-03-04
公開日2009-09-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Design, synthesis, and X-ray crystal structure of classical and nonclassical 2-amino-4-oxo-5-substituted-6-ethylthieno[2,3-d]pyrimidines as dual thymidylate synthase and dihydrofolate reductase inhibitors and as potential antitumor agents
J.Med.Chem., 52, 2009
3GI2
DownloadVisualize
BU of 3gi2 by Molmil
Human dihydrofolate reductase Q35K mutant inhibitor complex
分子名称: Dihydrofolate reductase, N-({4-[(2-amino-6-methyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-5-yl)sulfanyl]phenyl}carbonyl)-L-glutamic acid, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Cody, V.
登録日2009-03-05
公開日2009-09-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Design, synthesis, and X-ray crystal structure of classical and nonclassical 2-amino-4-oxo-5-substituted-6-ethylthieno[2,3-d]pyrimidines as dual thymidylate synthase and dihydrofolate reductase inhibitors and as potential antitumor agents.
J.Med.Chem., 52, 2009
1Q4Q
DownloadVisualize
BU of 1q4q by Molmil
Crystal structure of a DIAP1-Dronc complex
分子名称: Apoptosis 1 inhibitor, Nedd2-like caspase CG8091-PA, ZINC ION
著者Chai, J, Yan, N, Shi, Y.
登録日2003-08-04
公開日2003-11-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular mechanism of Reaper-Grim-Hid-mediated suppression of DIAP1-dependent Dronc ubiquitination
Nat.Struct.Biol., 10, 2003
3GHV
DownloadVisualize
BU of 3ghv by Molmil
Human dihydrofolate reductase Q35K/N64F double mutant inhibitor complex
分子名称: Dihydrofolate reductase, GLYCEROL, N-({4-[(2-amino-6-ethyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-5-yl)sulfanyl]phenyl}carbonyl)-L-glutamic acid, ...
著者Cody, V.
登録日2009-03-04
公開日2009-09-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Design, synthesis, and X-ray crystal structure of classical and nonclassical 2-amino-4-oxo-5-substituted-6-ethylthieno[2,3-d]pyrimidines as dual thymidylate synthase and dihydrofolate reductase inhibitors and as potential antitumor agents
J.Med.Chem., 52, 2009
8YKQ
DownloadVisualize
BU of 8ykq by Molmil
Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with X77
分子名称: 3C-like proteinase nsp5, N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide
著者Zou, X.F, Zhang, J, Li, J.
登録日2024-03-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.
Int.J.Biol.Macromol., 276, 2024
8YKP
DownloadVisualize
BU of 8ykp by Molmil
Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with X77
分子名称: 3C-like proteinase nsp5, N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide
著者Zou, X.F, Zhang, J, Li, J.
登録日2024-03-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.
Int.J.Biol.Macromol., 276, 2024
8YKN
DownloadVisualize
BU of 8ykn by Molmil
Crystal structure of SARS-Cov-2 main protease K90R mutant in complex with X77
分子名称: N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide, Non-structural protein 11
著者Wang, J, Zhang, J, Li, J.
登録日2024-03-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.
Int.J.Biol.Macromol., 276, 2024
8YKM
DownloadVisualize
BU of 8ykm by Molmil
Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with X77
分子名称: 3C-like proteinase nsp5, N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide
著者Zeng, P, Zhang, J, Li, J.
登録日2024-03-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.
Int.J.Biol.Macromol., 276, 2024
8YKL
DownloadVisualize
BU of 8ykl by Molmil
Crystal structure of MERS main protease in complex with X77
分子名称: N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide, ORF1a
著者Zhou, X.L, Lin, C, Zhang, J, Li, J.
登録日2024-03-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.
Int.J.Biol.Macromol., 276, 2024
8YKK
DownloadVisualize
BU of 8ykk by Molmil
Crystal structure of SARS main protease in complex with X77
分子名称: 3C-like proteinase nsp5, N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide
著者Zhou, X.L, Lin, C, Zhang, J, Li, J.
登録日2024-03-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.
Int.J.Biol.Macromol., 276, 2024
1SDZ
DownloadVisualize
BU of 1sdz by Molmil
Crystal structure of DIAP1 BIR1 bound to a Reaper peptide
分子名称: Apoptosis 1 inhibitor, Reaper, ZINC ION
著者Yan, N, Wu, J.W, Shi, Y.
登録日2004-02-15
公開日2004-04-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Molecular mechanisms of DrICE inhibition by DIAP1 and removal of inhibition by Reaper, Hid and Grim.
Nat.Struct.Mol.Biol., 11, 2004

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon