Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4LPB
DownloadVisualize
BU of 4lpb by Molmil
Crystal structure of a topoisomerase ATPase inhibitor
分子名称: 1-ethyl-3-{5'-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)-4-[4-(trifluoromethyl)-1,3-thiazol-2-yl]-3,3'-bipyridin-6-yl}urea, Topoisomerase IV subunit B
著者Boriack-Sjodin, A.
登録日2013-07-15
公開日2013-10-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Fragment-to-Hit-to-Lead Discovery of a Novel Pyridylurea Scaffold of ATP Competitive Dual Targeting Type II Topoisomerase Inhibiting Antibacterial Agents.
J.Med.Chem., 56, 2013
7QLG
DownloadVisualize
BU of 7qlg by Molmil
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V COMPLEXED WITH FE, NADH, AND GLYCEROL
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FE (III) ION, GLYCEROL, ...
著者Sridhar, S, Kiema, T.R, Widertsen, M, Wierenga, R.K.
登録日2021-12-20
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures and kinetic studies of a laboratory evolved aldehyde reductase explain the dramatic shift of its new substrate specificity.
Iucrj, 10, 2023
4LBZ
DownloadVisualize
BU of 4lbz by Molmil
Identifying ligand binding hot spots in proteins using brominated fragments
分子名称: AMMONIUM ION, Elongation factor Tu-A, MAGNESIUM ION, ...
著者Groftehauge, M.K, Therkelsen, M, Taaning, R, Skrydstrup, T, Morth, J.P, Nissen, P.
登録日2013-06-21
公開日2013-09-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.223 Å)
主引用文献Identifying ligand-binding hot spots in proteins using brominated fragments.
Acta Crystallogr.,Sect.F, 69, 2013
6GSH
DownloadVisualize
BU of 6gsh by Molmil
Feline Calicivirus Strain F9
分子名称: POTASSIUM ION, VP1
著者Conley, M.J, Bhella, D.
登録日2018-06-14
公開日2019-01-16
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Calicivirus VP2 forms a portal-like assembly following receptor engagement.
Nature, 565, 2019
4MOV
DownloadVisualize
BU of 4mov by Molmil
1.45 A Resolution Crystal Structure of Protein Phosphatase 1
分子名称: CHLORIDE ION, MANGANESE (II) ION, PHOSPHATE ION, ...
著者Choy, M.S, Peti, W, Page, R.
登録日2013-09-12
公開日2014-03-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.4503 Å)
主引用文献Understanding the antagonism of retinoblastoma protein dephosphorylation by PNUTS provides insights into the PP1 regulatory code.
Proc.Natl.Acad.Sci.USA, 111, 2014
6DCV
DownloadVisualize
BU of 6dcv by Molmil
Crystal structure of human anti-tau antibody CBTAU-27.1
分子名称: GLYCEROL, Light chain of CBTAU27.1 Fab, heavy chain of CBTAU-27.1 Fab
著者Zhu, X, Zhang, H, Wilson, I.A.
登録日2018-05-08
公開日2018-06-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A common antigenic motif recognized by naturally occurring human VH5-51/VL4-1 anti-tau antibodies with distinct functionalities.
Acta Neuropathol Commun, 6, 2018
6B0Z
DownloadVisualize
BU of 6b0z by Molmil
IDH1 R132H mutant in complex with IDH305
分子名称: (4R)-4-[(1S)-1-fluoroethyl]-3-[2-({(1S)-1-[4-methyl-2'-(trifluoromethyl)[3,4'-bipyridin]-6-yl]ethyl}amino)pyrimidin-4-yl]-1,3-oxazolidin-2-one, CITRATE ANION, Isocitrate dehydrogenase [NADP] cytoplasmic, ...
著者Xie, X, Kulathila, R.
登録日2017-09-15
公開日2017-11-08
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.334 Å)
主引用文献Discovery and Evaluation of Clinical Candidate IDH305, a Brain Penetrant Mutant IDH1 Inhibitor.
ACS Med Chem Lett, 8, 2017
7U8Z
DownloadVisualize
BU of 7u8z by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (CD2) complexed with fluorinated peptoid inhibitor
分子名称: 1,2-ETHANEDIOL, 4-({N-[2-(benzylamino)-2-oxoethyl]-4-(dimethylamino)benzamido}methyl)-3-fluoro-N-hydroxybenzamide, ACETATE ION, ...
著者Watson, P.R, Cragin, A.D, Christianson, D.W.
登録日2022-03-09
公開日2022-11-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Development of Fluorinated Peptoid-Based Histone Deacetylase (HDAC) Inhibitors for Therapy-Resistant Acute Leukemia.
J.Med.Chem., 65, 2022
7U4P
DownloadVisualize
BU of 7u4p by Molmil
Covalently stabilized triangular trimer composed of Abeta17-36 beta-hairpins
分子名称: Amyloid-beta 17-36 peptide
著者Kreutzer, A.G, Haerianardakani, S, Nowick, J.S.
登録日2022-02-28
公開日2023-03-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Antibodies Raised Against an A beta Oligomer Mimic Recognize Pathological Features in Alzheimer's Disease and Associated Amyloid-Disease Brain Tissue.
Acs Cent.Sci., 10, 2024
8BDD
DownloadVisualize
BU of 8bdd by Molmil
Crystal structure of Bacteroides ovatus CP926 PL17 alginate lyase
分子名称: Alginate lyase family protein, NICKEL (II) ION
著者Roenne, M.E, Tandrup, T, Wilkens, C.
登録日2022-10-19
公開日2023-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.
Appl.Environ.Microbiol., 89, 2023
8BDQ
DownloadVisualize
BU of 8bdq by Molmil
Crystal structure of Bacteroides ovatus CP926 PL38 alginate lyase
分子名称: Alginate lyase family protein, SULFATE ION
著者Roenne, M.E, Tandrup, T, Wilkens, C.
登録日2022-10-19
公開日2023-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.
Appl.Environ.Microbiol., 89, 2023
8CHF
DownloadVisualize
BU of 8chf by Molmil
cryo-EM Structure of Craf:14-3-3:Mek1
分子名称: 14-3-3 protein zeta isoform X1, 2-{4-[(1E)-1-(hydroxyimino)-2,3-dihydro-1H-inden-5-yl]-3-(pyridin-4-yl)-1H-pyrazol-1-yl}ethanol, Dual specificity mitogen-activated protein kinase kinase 1, ...
著者Dedden, D, Ulrich, G.
登録日2023-02-07
公開日2024-02-21
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (4.25 Å)
主引用文献Cryo-EM Structures of CRAF 2 /14-3-3 2 and CRAF 2 /14-3-3 2 /MEK1 2 Complexes.
J.Mol.Biol., 436, 2024
8CPO
DownloadVisualize
BU of 8cpo by Molmil
Crystal structure of the PolB16_OarG intein variant S1A, N183A, C111A, C165A
分子名称: PolB16 Intein Cys-less
著者Kattelmann, S, Pasch, T, Mootz, H.D, Kuemmel, D.
登録日2023-03-03
公開日2023-05-17
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural and biochemical analysis of a novel atypically split intein reveals a conserved histidine specific to cysteine-less inteins.
Chem Sci, 14, 2023
8CPN
DownloadVisualize
BU of 8cpn by Molmil
Crystal structure of the PolB16_OarG intein variant S1A, N183A
分子名称: IODIDE ION, PolB16 intein
著者Kattelmann, S, Pasch, T, Mootz, H.D, Kummel, D.
登録日2023-03-03
公開日2023-05-17
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and biochemical analysis of a novel atypically split intein reveals a conserved histidine specific to cysteine-less inteins.
Chem Sci, 14, 2023
6B9Q
DownloadVisualize
BU of 6b9q by Molmil
Single particle cryo-EM structure determination of the LuIII capsid protein
分子名称: Capsid protein VP2
著者Pittman, N.C, Agbandje-McKenna, M.
登録日2017-10-11
公開日2017-11-15
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image Reconstruction.
Viruses, 9, 2017
6BN5
DownloadVisualize
BU of 6bn5 by Molmil
Non-receptor Protein Tyrosine Phosphatase SHP2 F285S in Complex with Allosteric Inhibitor JLR-2
分子名称: 3-benzyl-8-chloro-2-hydroxy-4H-pyrimido[2,1-b][1,3]benzothiazol-4-one, Tyrosine-protein phosphatase non-receptor type 11
著者Blacklow, S.C, Stams, T, Fodor, M, LaRochelle, J.R.
登録日2017-11-16
公開日2017-12-13
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Identification of an allosteric benzothiazolopyrimidone inhibitor of the oncogenic protein tyrosine phosphatase SHP2.
Bioorg. Med. Chem., 25, 2017
2XIN
DownloadVisualize
BU of 2xin by Molmil
PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
分子名称: COBALT (II) ION, D-XYLOSE ISOMERASE, sorbitol
著者Janin, J.
登録日1992-04-06
公開日1993-07-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.
Biochemistry, 31, 1992
6CRF
DownloadVisualize
BU of 6crf by Molmil
Crystal Structure of Shp2 E76K GOF Mutant in the Open Conformation
分子名称: GLYCEROL, Tyrosine-protein phosphatase non-receptor type 11
著者Stams, T, Fodor, M.
登録日2018-03-17
公開日2018-11-07
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Structural reorganization of SHP2 by oncogenic mutations and implications for oncoprotein resistance to allosteric inhibition.
Nat Commun, 9, 2018
6CRG
DownloadVisualize
BU of 6crg by Molmil
Crystal Structure of Shp2 E76K GOF Mutant in complex with SHP099
分子名称: 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine, GLYCEROL, SULFATE ION, ...
著者Stams, T, Fodor, M.
登録日2018-03-17
公開日2018-11-07
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural reorganization of SHP2 by oncogenic mutations and implications for oncoprotein resistance to allosteric inhibition.
Nat Commun, 9, 2018
3K8G
DownloadVisualize
BU of 3k8g by Molmil
Structure of crystal form I of TP0453
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 30kLP
著者Zhu, G, Luthra, A, Desrosiers, D, Koszelak-Rosenblum, M, Mulay, V, Radolf, J.D, Malkowski, M.G.
登録日2009-10-14
公開日2010-10-27
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The Transition from Closed to Open Conformation of Treponema pallidum Outer Membrane-associated Lipoprotein TP0453 Involves Membrane Sensing and Integration by Two Amphipathic Helices.
J.Biol.Chem., 286, 2011
3K8I
DownloadVisualize
BU of 3k8i by Molmil
Structure of crystal form IV of TP0453
分子名称: 30kLP
著者Zhu, G, Luthra, A, Desrosiers, D, Koszelak-Rosenblum, M, Mulay, V, Radolf, J.D, Malkowski, M.G.
登録日2009-10-14
公開日2010-10-27
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Transition from Closed to Open Conformation of Treponema pallidum Outer Membrane-associated Lipoprotein TP0453 Involves Membrane Sensing and Integration by Two Amphipathic Helices.
J.Biol.Chem., 286, 2011
7UUR
DownloadVisualize
BU of 7uur by Molmil
The 1.67 Angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, HYDROXIDE ION, ...
著者Grinter, R, Venugopal, H, Kropp, A, Greening, C.
登録日2022-04-28
公開日2023-01-04
最終更新日2023-03-29
実験手法ELECTRON MICROSCOPY (1.67 Å)
主引用文献Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
7UUS
DownloadVisualize
BU of 7uus by Molmil
The CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Full complex focused refinement of stalk
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
著者Grinter, R, Venugopal, H, Kropp, A, Greening, C.
登録日2022-04-28
公開日2023-01-04
最終更新日2023-04-05
実験手法ELECTRON MICROSCOPY (8 Å)
主引用文献Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
7UTD
DownloadVisualize
BU of 7utd by Molmil
The 2.19-angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Complex minus stalk
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
著者Grinter, R, Venugopal, H, Kropp, A, Greening, C.
登録日2022-04-26
公開日2023-01-04
最終更新日2023-04-05
実験手法ELECTRON MICROSCOPY (2.19 Å)
主引用文献Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
4OYJ
DownloadVisualize
BU of 4oyj by Molmil
Structure of the apo HOIP PUB domain
分子名称: E3 ubiquitin-protein ligase RNF31, SULFATE ION
著者Elliott, P.R, Komander, D.
登録日2014-02-12
公開日2014-05-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular Basis and Regulation of OTULIN-LUBAC Interaction.
Mol.Cell, 54, 2014

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon