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3SYB
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BU of 3syb by Molmil
Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP)
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Glycine-glutamate dipeptide porin OpdP, SULFATE ION
著者van den Berg, B, Eren, E.
登録日2011-07-16
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3T24
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BU of 3t24 by Molmil
Crystal structure of Pseudomonas aeruginosa OpdQ
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, SULFATE ION, porin
著者van den Berg, B, Eren, E.
登録日2011-07-22
公開日2012-02-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3SY9
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BU of 3sy9 by Molmil
Crystal structure of Pseudomonas aeruginosa OccD2 (OpdC)
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Histidine porin OpdC, octyl beta-D-glucopyranoside
著者van den Berg, B, Eren, E.
登録日2011-07-16
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3T0S
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BU of 3t0s by Molmil
Crystal structure of Pseudomonas aeruginosa OccK4 (OpdL)
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, porin
著者van den Berg, B, Eren, E.
登録日2011-07-20
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3SY7
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BU of 3sy7 by Molmil
Improved crystal structure of Pseudomonas aeruginosa OprD
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Porin D
著者van den Berg, B, Eren, E.
登録日2011-07-15
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3SYS
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BU of 3sys by Molmil
Improved crystal structure of Pseudomonas aeruginosa OccK1 (OpdK)
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-ETHANEDIOL, 4-HYDROXY-3-METHOXYBENZOATE, ...
著者van den Berg, B, Eren, E.
登録日2011-07-18
公開日2012-02-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3T20
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BU of 3t20 by Molmil
Crystal structure of Pseudomonas aeruginosa OccK5 (OpdH)
分子名称: Cis-aconitate porin OpdH
著者van den Berg, B, Eren, E.
登録日2011-07-22
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
6K35
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BU of 6k35 by Molmil
Crystal structure of GH20 exo beta-N-acetylglucosaminidase from Vibrio harveyi in complex with NAG-thiazoline
分子名称: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, Beta-N-acetylglucosaminidase Nag2
著者Meekrathok, P, Stubbs, K.A, Bulmer, D.M, van den Berg, B, Suginta, W.
登録日2019-05-16
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献NAG-thiazoline is a potent inhibitor of the Vibrio campbellii GH20 beta-N-Acetylglucosaminidase.
Febs J., 287, 2020
8P98
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BU of 8p98 by Molmil
BtuB3G3 bound to cyanocobalamin with ordered EL8
分子名称: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2023-06-05
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8OKV
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BU of 8okv by Molmil
lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl
分子名称: CYANOCOBALAMIN, Putative surface layer protein
著者Javier Abellon-Ruiz, J, van den Berg, B, Jana, K, Kleinekathofer, U, Silale, A, Frey, A.M, Basle, A, Trost, M.
登録日2023-03-29
公開日2023-09-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P97
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BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
分子名称: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2023-06-05
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
5YQW
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BU of 5yqw by Molmil
Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria
分子名称: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICKEL (II) ION, ...
著者Suginta, W, Sritho, N, Ranok, A, Kitaoku, Y, Bulmer, D.M, van den Berg, B, Fukamizo, T.
登録日2017-11-08
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marineVibriobacteria.
J. Biol. Chem., 293, 2018
7BIZ
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BU of 7biz by Molmil
Structure of a B12 binding lipoprotein from Bacteroides thetaiotaomicron
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CYANOCOBALAMIN, ...
著者Abellon-Ruiz, J, van den Berg, B.
登録日2021-01-13
公開日2022-03-02
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Gut Commensal Bacteroidetes Encode a Novel Class of Vitamin B 12 -Binding Proteins.
Mbio, 13, 2022
6GIE
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BU of 6gie by Molmil
Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 33-36 kDa outer membrane protein
著者Abellon-Ruiz, J, Zahn, M, Basle, A, van den Berg, B.
登録日2018-05-10
公開日2018-09-19
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33.
Acta Crystallogr D Struct Biol, 74, 2018
6ZM1
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BU of 6zm1 by Molmil
Open-closed state of the Bt1762-Bt1763 levan transport system
分子名称: SusC homolog, SusD homolog
著者White, J.B.R, van den Berg, B, Ranson, N.A.
登録日2020-07-01
公開日2020-11-11
最終更新日2021-01-20
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZLU
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BU of 6zlu by Molmil
Closed-closed state of the Bt1762-Bt1763 levan transport system
分子名称: SusC homolog, SusD homolog
著者White, J.B.R, van den Berg, B, Ranson, N.A.
登録日2020-07-01
公開日2020-11-11
最終更新日2021-01-20
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZLT
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BU of 6zlt by Molmil
Open-open state of the Bt1762-Bt1763 levan transport system
分子名称: SusC homolog, SusD homolog
著者White, J.B.R, van den Berg, B, Ranson, N.A.
登録日2020-07-01
公開日2020-11-11
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
5DL8
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BU of 5dl8 by Molmil
Crystal structure of Acinetobacter baumannii OccAB4
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Benzoate transport porin BenP, CALCIUM ION
著者Zahn, M, Basle, A, van den Berg, B.
登録日2015-09-04
公開日2016-02-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
5DL5
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BU of 5dl5 by Molmil
Crystal structure of Acinetobacter baumannii OccAB1
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Membrane protein, PHOSPHATE ION
著者Zahn, M, Basle, A, van den Berg, B.
登録日2015-09-04
公開日2016-02-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
5DL7
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BU of 5dl7 by Molmil
Crystal structure of Acinetobacter baumannii OccAB3
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CALCIUM ION, Porin
著者Zahn, M, Basle, A, van den Berg, B.
登録日2015-09-04
公開日2016-02-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
5DL6
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BU of 5dl6 by Molmil
Crystal structure of Acinetobacter baumannii OccAB2
分子名称: Putative porin for vanillate trafficking (VanP)
著者Zahn, M, Basle, A, van den Berg, B.
登録日2015-09-04
公開日2016-02-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
8BLW
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BU of 8blw by Molmil
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
分子名称: Vitamin B12 transporter BtuB1, YncE family protein, beta-D-galactopyranose
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2022-11-10
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
7VU1
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BU of 7vu1 by Molmil
Chitoporin from Escherichia coli complex with chitohexaose
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitoporin, ...
著者Suginta, W, Soysa, H.S.M, Amornloetwattana, R, van den Berg, B.
登録日2021-11-01
公開日2022-11-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Chitporin from Escherichia coli complex with chitohexaose
To Be Published
8AA4
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BU of 8aa4 by Molmil
SusC components of the dextran utilisation system (utilisome)
分子名称: SusC homolog
著者White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
登録日2022-06-29
公開日2023-06-07
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA1
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BU of 8aa1 by Molmil
Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12
分子名称: MAGNESIUM ION, SusC homolog, SusD homolog, ...
著者White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
登録日2022-06-29
公開日2023-06-07
最終更新日2023-06-21
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023

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件を2024-10-16に公開中

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