Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7QZ8
DownloadVisualize
BU of 7qz8 by Molmil
Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced by the unnatural amino acid 5,6-difluoroTrp
分子名称: DAUNOMYCIN, Transcriptional regulator, PadR-like family
著者Thunnissen, A.M.W.H.
登録日2022-01-30
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
7QZ7
DownloadVisualize
BU of 7qz7 by Molmil
Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced by 5,6,7-trifluoroTrp
分子名称: DAUNOMYCIN, Transcriptional regulator, PadR-like family
著者Thunnissen, A.M.W.H.
登録日2022-01-30
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
7QZ9
DownloadVisualize
BU of 7qz9 by Molmil
Transcriptional regulator LmrR with Trp-67 and Trp-96 replaced by the unnatural amino acid 5,6-difluoroTrp
分子名称: Transcriptional regulator, PadR-like family
著者Thunnissen, A.M.W.H.
登録日2022-01-30
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
7QZ5
DownloadVisualize
BU of 7qz5 by Molmil
Transcriptional regulator LmrR with Trp-67 and Trp-96 replaced by the unnatural amino acid 5-fluoroTrp
分子名称: Transcriptional regulator, PadR-like family
著者Thunnissen, A.M.W.H.
登録日2022-01-30
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
2FLT
DownloadVisualize
BU of 2flt by Molmil
The X-ray structure of the cis-3-chloroacrylic acid dehalogenase cis-CaaD inactivated with (R)-Oxirane-2-carboxylate
分子名称: LACTIC ACID, cis-3-chloroacrylic acid dehalogenase
著者de Jong, R.M.
登録日2006-01-06
公開日2006-11-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of Native and Inactivated cis-3-Chloroacrylic Acid Dehalogenase: STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY AND INACTIVATION BY (R)-OXIRANE-2-CARBOXYLATE.
J.Biol.Chem., 282, 2007
4HJY
DownloadVisualize
BU of 4hjy by Molmil
2.4 A Crystal structure of E. coli MltE-E64Q with bound chitopentaose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Endo-type membrane-bound lytic murein transglycosylase A
著者Fibriansah, G, Gliubich, F.I, Thunnissen, A.-M.W.H.
登録日2012-10-14
公開日2012-10-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献On the Mechanism of Peptidoglycan Binding and Cleavage by the endo-Specific Lytic Transglycosylase MltE from Escherichia coli.
Biochemistry, 51, 2012
4ZZD
DownloadVisualize
BU of 4zzd by Molmil
CRYSTAL STRUCTURE OF MULTIDRUG RESISTANCE REGULATOR LMRR BOUND TO RIBOFLAVIN
分子名称: RIBOFLAVIN, TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY
著者Madoori, P.K, Thunnissen, A.-M.W.H.
登録日2015-05-22
公開日2015-08-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.351 Å)
主引用文献Binding of the Lactococcal Drug Dependent Transcriptional Regulator LmrR to Its Ligands and Responsive Promoter Regions.
Plos One, 10, 2015
4HJV
DownloadVisualize
BU of 4hjv by Molmil
Crystal structure of E. coli MltE with bound bulgecin and murodipeptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid, 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, Endo-type membrane-bound lytic murein transglycosylase A, ...
著者Fibriansah, G, Gliubich, F.I, Thunnissen, A.-M.W.H.
登録日2012-10-14
公開日2012-10-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献On the Mechanism of Peptidoglycan Binding and Cleavage by the endo-Specific Lytic Transglycosylase MltE from Escherichia coli.
Biochemistry, 51, 2012
4HJZ
DownloadVisualize
BU of 4hjz by Molmil
1.9 A Crystal structure of E. coli MltE-E64Q with bound chitopentaose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Fibriansah, G, Gliubich, F.I, Thunnissen, A.-M.W.H.
登録日2012-10-14
公開日2012-10-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献On the Mechanism of Peptidoglycan Binding and Cleavage by the endo-Specific Lytic Transglycosylase MltE from Escherichia coli.
Biochemistry, 51, 2012
1QSA
DownloadVisualize
BU of 1qsa by Molmil
CRYSTAL STRUCTURE OF THE 70 KDA SOLUBLE LYTIC TRANSGLYCOSYLASE SLT70 FROM ESCHERICHIA COLI AT 1.65 ANGSTROMS RESOLUTION
分子名称: ACETATE ION, GLYCEROL, PROTEIN (SOLUBLE LYTIC TRANSGLYCOSYLASE SLT70), ...
著者van Asselt, E.J, Thunnissen, A.-M.W.H, Dijkstra, B.W.
登録日1999-06-20
公開日1999-09-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献High resolution crystal structures of the Escherichia coli lytic transglycosylase Slt70 and its complex with a peptidoglycan fragment.
J.Mol.Biol., 291, 1999
3T36
DownloadVisualize
BU of 3t36 by Molmil
Crystal structure of lytic transglycosylase MltE from Eschericha coli
分子名称: Endo-type membrane-bound lytic murein transglycosylase A, SULFATE ION
著者Fibriansah, G, Gliubich, F.I, Thunnissen, A.-M.W.H.
登録日2011-07-24
公開日2012-07-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献On the Mechanism of Peptidoglycan Binding and Cleavage by the endo-Specific Lytic Transglycosylase MltE from Escherichia coli.
Biochemistry, 51, 2012
1QTE
DownloadVisualize
BU of 1qte by Molmil
CRYSTAL STRUCTURE OF THE 70 KDA SOLUBLE LYTIC TRANSGLYCOSYLASE SLT70 FROM ESCHERICHIA COLI AT 1.90 A RESOLUTION IN COMPLEX WITH A 1,6-ANHYDROMUROTRIPEPTIDE
分子名称: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
著者van Asselt, E.J, Thunnissen, A.-M.W.H, Dijkstra, B.W.
登録日1999-06-27
公開日1999-08-31
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献High resolution crystal structures of the Escherichia coli lytic transglycosylase Slt70 and its complex with a peptidoglycan fragment.
J.Mol.Biol., 291, 1999
3R6V
DownloadVisualize
BU of 3r6v by Molmil
Crystal structure of aspartase from Bacillus sp. YM55-1 with bound L-aspartate
分子名称: ASPARTIC ACID, Aspartase, CALCIUM ION
著者Fibriansah, G, Puthan Veetil, V, Poelarends, G.J, Thunnissen, A.-M.W.H.
登録日2011-03-22
公開日2011-07-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for the catalytic mechanism of aspartate ammonia lyase.
Biochemistry, 50, 2011
3R6Q
DownloadVisualize
BU of 3r6q by Molmil
A triclinic-lattice structure of aspartase from Bacillus sp. YM55-1
分子名称: Aspartase, CALCIUM ION
著者Fibriansah, G, Puthan Veetil, V, Poelarends, G.J, Thunnissen, A.-M.W.H.
登録日2011-03-22
公開日2011-07-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for the catalytic mechanism of aspartate ammonia lyase.
Biochemistry, 50, 2011
3RYB
DownloadVisualize
BU of 3ryb by Molmil
Lactococcal OppA complexed with SLSQSLSQS
分子名称: Oligopeptide, Oligopeptide-binding protein oppA
著者Berntsson, R.P.-A, Thunnissen, A.-M.W.H, Poolman, B, Slotboom, D.-J.
登録日2011-05-11
公開日2011-06-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
J.Bacteriol., 193, 2011
3RYA
DownloadVisualize
BU of 3rya by Molmil
Lactococcal OppA complexed with SLSQLSSQS
分子名称: Oligopeptide, Oligopeptide-binding protein oppA
著者Berntsson, R.P.-A, Thunnissen, A.-M.W.H, Poolman, B, Slotboom, D.-J.
登録日2011-05-11
公開日2011-06-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
J.Bacteriol., 193, 2011
3R6Y
DownloadVisualize
BU of 3r6y by Molmil
Crystal structure of chymotrypsin-treated aspartase from Bacillus sp. YM55-1
分子名称: Aspartase, CALCIUM ION
著者Fibriansah, G, Puthan Veetil, V, Poelarends, G.J, Thunnissen, A.-M.W.H.
登録日2011-03-22
公開日2011-07-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for the catalytic mechanism of aspartate ammonia lyase.
Biochemistry, 50, 2011
6TIM
DownloadVisualize
BU of 6tim by Molmil
THE ADAPTABILITY OF THE ACTIVE SITE OF TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE AS OBSERVED IN THE CRYSTAL STRUCTURES OF THREE DIFFERENT COMPLEXES
分子名称: SN-GLYCEROL-3-PHOSPHATE, TRIOSEPHOSPHATE ISOMERASE
著者Noble, M.E.M, Wierenga, R.K, Hol, W.G.J.
登録日1991-04-23
公開日1992-10-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The adaptability of the active site of trypanosomal triosephosphate isomerase as observed in the crystal structures of three different complexes.
Proteins, 10, 1991
7PUO
DownloadVisualize
BU of 7puo by Molmil
Structure of a fused 4-OT variant engineered for asymmetric Michael addition reactions
分子名称: 2-hydroxymuconate tautomerase,Chains: A,B,C,D,E,F,2-hydroxymuconate tautomerase, CHLORIDE ION, GLYCEROL
著者Rozeboom, H.J, Thunnissen, A.M.W.H, Poelarends, G.J.
登録日2021-09-30
公開日2022-01-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Gene Fusion and Directed Evolution to Break Structural Symmetry and Boost Catalysis by an Oligomeric C-C Bond-Forming Enzyme.
Angew.Chem.Int.Ed.Engl., 61, 2022
6I8N
DownloadVisualize
BU of 6i8n by Molmil
Crystal structure of LmrR with V15 replaced by unnatural amino acid 4-amino-L-phenylalanine
分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, Transcriptional regulator, PadR-like family
著者Reddem, R, Thunnissen, A.M.W.H.
登録日2018-11-20
公開日2019-01-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Directed Evolution of a Designer Enzyme Featuring an Unnatural Catalytic Amino Acid.
Angew. Chem. Int. Ed. Engl., 58, 2019
3F8C
DownloadVisualize
BU of 3f8c by Molmil
Crystal structure of multidrug binding transcriptional regulator LmrR complexed with Hoechst 33342
分子名称: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, Transcriptional regulator, PadR-like family
著者Madoori, P.K, Agustiandari, H, Driessen, A.J.M, Thunnissen, A.-M.W.H.
登録日2008-11-12
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the transcriptional regulator LmrR and its mechanism of multidrug recognition.
Embo J., 28, 2009
3F8B
DownloadVisualize
BU of 3f8b by Molmil
Crystal structure of the multidrug binding transcriptional regulator LmrR in drug free state
分子名称: Transcriptional regulator, PadR-like family
著者Madoori, P.K, Agustiandari, H, Driessen, A.J.M, Thunnissen, A.-M.W.H.
登録日2008-11-12
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the transcriptional regulator LmrR and its mechanism of multidrug recognition.
Embo J., 28, 2009
3FTO
DownloadVisualize
BU of 3fto by Molmil
Crystal structure of OppA in a open conformation
分子名称: Oligopeptide-binding protein oppA
著者Berntsson, R.P.-A, Oktaviani, N.A, Fusetti, F, Thunnissen, A.-M.W.H, Poolman, B, Slotboom, D.-J.
登録日2009-01-13
公開日2009-03-31
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Selenomethionine incorporation in proteins expressed in Lactococcus lactis.
Protein Sci., 18, 2009
3F8F
DownloadVisualize
BU of 3f8f by Molmil
Crystal structure of multidrug binding transcriptional regulator LmrR complexed with Daunomycin
分子名称: DAUNOMYCIN, Transcriptional regulator, PadR-like family
著者Madoori, P.K, Agustiandari, H, Driessen, A.J.M, Thunnissen, A.-M.W.H.
登録日2008-11-12
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the transcriptional regulator LmrR and its mechanism of multidrug recognition.
Embo J., 28, 2009
5MDX
DownloadVisualize
BU of 5mdx by Molmil
Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana
分子名称: CHLOROPHYLL A, CHLOROPHYLL B, Chlorophyll a-b binding protein 1, ...
著者van Bezouwen, L.S, Caffarri, S, Kale, R.S, Kouril, R, Thunnissen, A.M.W.H, Oostergetel, G.T, Boekema, E.J.
登録日2016-11-13
公開日2017-06-21
最終更新日2019-04-24
実験手法ELECTRON MICROSCOPY (5.3 Å)
主引用文献Subunit and chlorophyll organization of the plant photosystem II supercomplex.
Nat Plants, 3, 2017

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon