Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6VGN
DownloadVisualize
BU of 6vgn by Molmil
ClpP1P2 complex from M. tuberculosis bound to ADEP
分子名称: ATP-dependent Clp protease proteolytic subunit, ATP-dependent Clp protease proteolytic subunit 1, R0M-WFP-ALO-PRO-YCP-ALA-MP8
著者Ripstein, Z.A, Vahidi, S, Rubinstein, J.L, Kay, L.E.
登録日2020-01-08
公開日2020-03-18
最終更新日2020-04-01
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献An allosteric switch regulatesMycobacterium tuberculosisClpP1P2 protease function as established by cryo-EM and methyl-TROSY NMR.
Proc.Natl.Acad.Sci.USA, 117, 2020
5GAR
DownloadVisualize
BU of 5gar by Molmil
Thermus thermophilus V/A-ATPase, conformation 1
分子名称: Archaeal/vacuolar-type H+-ATPase subunit I, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
著者Schep, D.G, Zhao, J, Rubinstein, J.L.
登録日2016-02-05
公開日2016-03-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (6.4 Å)
主引用文献Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
8SMR
DownloadVisualize
BU of 8smr by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
分子名称: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2023-04-26
公開日2023-10-11
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
8SNH
DownloadVisualize
BU of 8snh by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
分子名称: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2023-04-27
公開日2023-10-11
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
8SQL
DownloadVisualize
BU of 8sql by Molmil
Cleaved Ycf1p Monomer in the Beta Conformation
分子名称: Metal resistance protein YCF1, PHOSPHATIDYLETHANOLAMINE, Unknown peptide from Ycf1p R region
著者Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
登録日2023-05-04
公開日2024-05-08
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cleaved Ycf1p Monomer in the Beta Conformation
To Be Published
8SQ0
DownloadVisualize
BU of 8sq0 by Molmil
Cleaved Ycf1p Dimer in the IFwide-beta conformation
分子名称: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate, 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, Metal resistance protein YCF1, ...
著者Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
登録日2023-05-04
公開日2024-05-08
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of a dimeric ABC transporter
To Be Published
8SQM
DownloadVisualize
BU of 8sqm by Molmil
Cleaved Ycf1p Monomer in the IFwide-alpha conformation
分子名称: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate, Metal resistance protein YCF1, Unknown peptide from Ycf1p R region
著者Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
登録日2023-05-04
公開日2024-05-08
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of a dimeric ABC transporter
To Be Published
7MPE
DownloadVisualize
BU of 7mpe by Molmil
Cryo-EM structure of the yeast cadmium factor 1 protein (Ycf1p)
分子名称: Metal resistance protein YCF1
著者Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
登録日2021-05-04
公開日2021-06-02
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of Ycf1p reveals the transmembrane domain TMD0 and the regulatory region of ABCC transporters.
Proc.Natl.Acad.Sci.USA, 118, 2021
7LKF
DownloadVisualize
BU of 7lkf by Molmil
WT Chicken Scap L1-L7 / Fab 4G10 complex focused refinement
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4G10 heavy chain, 4G10 light chain, ...
著者Kober, D.L, Radhakrishnan, A, Goldstein, J.L, Brown, M.S, Clark, L.D, Bai, X.-C, Rosenbaum, D.M.
登録日2021-02-02
公開日2021-06-30
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Scap structures highlight key role for rotation of intertwined luminal loops in cholesterol sensing.
Cell, 184, 2021
7LKH
DownloadVisualize
BU of 7lkh by Molmil
Chicken Scap D435V L1-L7 domain / Fab complex focused map
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4G10 Fab heavy chain, 4G10 Fab kappa chain, ...
著者Kober, D.L, Radhakrishnan, A, Goldstein, J.L, Brown, M.S, Clark, L.D, Bai, X.-C, Rosenbaum, D.M.
登録日2021-02-02
公開日2021-06-30
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Scap structures highlight key role for rotation of intertwined luminal loops in cholesterol sensing.
Cell, 184, 2021
7MD2
DownloadVisualize
BU of 7md2 by Molmil
The F1 region of ammocidin-bound Saccharomyces cerevisiae ATP synthase
分子名称: (3~{E},5~{Z},7~{E},9~{R},10~{S},11~{E},13~{E},15~{E},17~{R},18~{S},20~{S})-20-[(1~{R})-1-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{S},4~{S},5~{S},6~{R})-5-[(2~{S},4~{R},5~{R},6~{R})-4,6-dimethyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-4-oxidanyl-oxan-2-yl]oxy-3-methoxy-6-(3-methoxypropyl)-5-methyl-2,4-bis(oxidanyl)oxan-2-yl]ethyl]-5,18-dimethoxy-3,7,9,11,13,15-hexamethyl-10-[(2~{R},3~{S},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13,15-hexaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
著者Guo, H, Rubinstein, J.L.
登録日2021-04-03
公開日2021-08-11
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
7MD3
DownloadVisualize
BU of 7md3 by Molmil
The F1 region of apoptolidin-bound Saccharomyces cerevisiae ATP synthase
分子名称: (3~{E},5~{E},7~{E},9~{R},10~{R},11~{E},13~{E},17~{S},18~{S},20~{S})-18-methoxy-20-[(~{R})-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(2~{R})-3-methoxy-2-[(2~{R},4~{S},5~{S},6~{S})-5-[(2~{S},4~{R},5~{R},6~{R})-4-methoxy-6-methyl-5-oxidanyl-oxan-2-yl]oxy-4,6-dimethyl-4-oxidanyl-oxan-2-yl]oxy-propyl]-3,5-dimethyl-2,4-bis(oxidanyl)oxan-2-yl]-oxidanyl-methyl]-10-[(2~{R},3~{S},4~{S},5~{R},6~{S})-5-methoxy-6-methyl-3,4-bis(oxidanyl)oxan-2-yl]oxy-3,5,7,9,13-pentamethyl-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13-pentaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
著者Guo, H, Rubinstein, J.L.
登録日2021-04-03
公開日2021-08-11
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
5I1M
DownloadVisualize
BU of 5i1m by Molmil
Yeast V-ATPase average of densities, a subunit segment
分子名称: V-type proton ATPase subunit a, vacuolar isoform
著者Schep, D.G, Zhao, J, Rubinstein, J.L.
登録日2016-02-05
公開日2016-03-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
6HWH
DownloadVisualize
BU of 6hwh by Molmil
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
分子名称: CARDIOLIPIN, COPPER (II) ION, Co-purified unknown peptide built as polyALA, ...
著者Wiseman, B, Nitharwal, R.G, Fedotovskaya, O, Schafer, J, Guo, H, Kuang, Q, Benlekbir, S, Sjostrand, D, Adelroth, P, Rubinstein, J.L, Brzezinski, P, Hogbom, M.
登録日2018-10-12
公開日2018-11-07
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of a functional obligate complex III2IV2respiratory supercomplex from Mycobacterium smegmatis.
Nat. Struct. Mol. Biol., 25, 2018
6B8H
DownloadVisualize
BU of 6b8h by Molmil
Mosaic model of yeast mitochondrial ATP synthase monomer
分子名称: AATP synthase subunit g, ATP synthase catalytic sector F1 epsilon subunit, ATP synthase protein 8, ...
著者Guo, H, Bueler, S.A, Rubinstein, J.L.
登録日2017-10-07
公開日2018-01-17
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Atomic model for the dimeric FO region of mitochondrial ATP synthase.
Science, 358, 2017
6B2Z
DownloadVisualize
BU of 6b2z by Molmil
Cryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase
分子名称: ATP synthase protein 8, ATP synthase subunit a, ATP synthase subunit b, ...
著者Guo, H, Rubinstein, J.L.
登録日2017-09-20
公開日2017-11-08
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Atomic model for the dimeric FO region of mitochondrial ATP synthase.
Science, 358, 2017
6BTM
DownloadVisualize
BU of 6btm by Molmil
Structure of Alternative Complex III from Flavobacterium johnsoniae (Wild Type)
分子名称: (2S)-3-hydroxypropane-1,2-diyl ditetradecanoate, Alternative Complex III subunit A, Alternative Complex III subunit B, ...
著者Sun, C, Benlekbir, S, Venkatakrishnan, P, Yuhang, W, Tajkhorshid, E, Rubinstein, J.L, Gennis, R.B.
登録日2017-12-07
公開日2018-05-09
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of the alternative complex III in a supercomplex with cytochrome oxidase.
Nature, 557, 2018
2P3F
DownloadVisualize
BU of 2p3f by Molmil
Crystal structure of the factor Xa/NAP5 complex
分子名称: Anti-coagulant protein 5, Coagulation factor X, SODIUM ION
著者Rios-Steiner, J.L, Murakami, M.T, Tulinsky, A, Arni, R.K.
登録日2007-03-08
公開日2007-11-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Active and exo-site inhibition of human factor Xa: structure of des-Gla factor Xa inhibited by NAP5, a potent nematode anticoagulant protein from Ancylostoma caninum
J.Mol.Biol., 371, 2007
7RH6
DownloadVisualize
BU of 7rh6 by Molmil
Mycobacterial CIII2CIV2 supercomplex, inhibitor free, -Lpqe cyt cc open
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
登録日2021-07-16
公開日2021-08-04
最終更新日2021-11-17
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RH7
DownloadVisualize
BU of 7rh7 by Molmil
Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
登録日2021-07-16
公開日2021-08-04
最終更新日2022-02-23
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RH5
DownloadVisualize
BU of 7rh5 by Molmil
Mycobacterial CIII2CIV2 supercomplex, Inhibitor free
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
登録日2021-07-16
公開日2021-08-04
最終更新日2021-11-10
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RJA
DownloadVisualize
BU of 7rja by Molmil
Complex III2 from Candida albicans, inhibitor free
分子名称: Cytochrome b, Cytochrome b-c1 complex subunit 2, mitochondrial, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2021-07-20
公開日2021-09-15
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III.
Structure, 30, 2022
7RJE
DownloadVisualize
BU of 7rje by Molmil
Complex III2 from Candida albicans, Inz-5 bound
分子名称: 3-[2-fluoro-5-(trifluoromethyl)phenyl]-7-methyl-1-[(2-methyl-2H-tetrazol-5-yl)methyl]-1H-indazole, Cytochrome b, Cytochrome b-c1 complex subunit 2, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2021-07-20
公開日2021-09-15
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III.
Structure, 30, 2022
7RJD
DownloadVisualize
BU of 7rjd by Molmil
Complex III2 from Candida albicans, inhibitor free, Rieske head domain in c position
分子名称: Cytochrome b, Cytochrome b-c1 complex subunit 2, mitochondrial, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2021-07-20
公開日2021-09-15
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III.
Structure, 30, 2022
7RJC
DownloadVisualize
BU of 7rjc by Molmil
Complex III2 from Candida albicans, inhibitor free, Rieske head domain in intermediate position
分子名称: Cytochrome b, Cytochrome b-c1 complex subunit 2, mitochondrial, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2021-07-20
公開日2021-09-15
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III.
Structure, 30, 2022

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon