7X7I
| Ancestral L-Lys oxidase (AncLLysO-2) ligand free form | 分子名称: | FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Motoyama, T, Ishida, C, Hasebe, F, Ito, S, Nakano, S. | 登録日 | 2022-03-09 | 公開日 | 2023-01-18 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis Acs Omega, 7, 2022
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7X7K
| Ancestral L-Lys oxidase (AncLLysO-2) L-Arg binding form | 分子名称: | ARGININE, FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Motoyama, T, Ishida, C, Hasebe, F, Ito, S, Nakano, S. | 登録日 | 2022-03-09 | 公開日 | 2023-01-18 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis Acs Omega, 7, 2022
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7X7J
| Ancestral L-Lys oxidase (AncLLysO-2) L-Lys binding form | 分子名称: | FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE, LYSINE | 著者 | Motoyama, T, Ishida, C, Hasebe, F, Ito, S, Nakano, S. | 登録日 | 2022-03-09 | 公開日 | 2023-01-18 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis Acs Omega, 7, 2022
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7CFO
| Crystal structure of human RXRalpha ligand binding domain complexed with CBTF-EE. | 分子名称: | 1-[3-(2-ethoxyethoxy)-5,5,8,8-tetramethyl-6,7-dihydronaphthalen-2-yl]-2-(trifluoromethyl)benzimidazole-5-carboxylic acid, GLYCEROL, Retinoic acid receptor RXR-alpha | 著者 | Watanabe, M, Fujihara, M, Motoyama, T, Kawasaki, M, Yamada, S, Takamura, Y, Ito, S, Makishima, M, Nakano, S, Kakuta, H. | 登録日 | 2020-06-27 | 公開日 | 2021-01-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Discovery of a "Gatekeeper" Antagonist that Blocks Entry Pathway to Retinoid X Receptors (RXRs) without Allosteric Ligand Inhibition in Permissive RXR Heterodimers. J.Med.Chem., 64, 2021
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7EIH
| Ancestral L-Lys oxidase (ligand free form) | 分子名称: | FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION | 著者 | Sugiura, S, Nakano, S, Niwa, M, Hasebe, F, Ito, S. | 登録日 | 2021-03-31 | 公開日 | 2021-08-11 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining. J.Biol.Chem., 297, 2021
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7EII
| Ancestral L-Lys oxidase K387A variant (L-Lys binding form) | 分子名称: | FAD dependent L-Lys oxidase, FLAVIN-ADENINE DINUCLEOTIDE, LYSINE | 著者 | Sugiura, S, Nakano, S, Niwa, M, Hasebe, F, Ito, S. | 登録日 | 2021-03-31 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining. J.Biol.Chem., 297, 2021
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7EIJ
| Ancestral L-Lys oxidase K387A variant (L-Arg binding form) | 分子名称: | ARGININE, FAD dependent L-Lys oxidase, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Sugiura, S, Nakano, S, Niwa, M, Hasebe, F, Ito, S. | 登録日 | 2021-03-31 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining. J.Biol.Chem., 297, 2021
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7BXS
| 2-amino-3-ketobutyrate CoA ligase from Cupriavidus necator glycine binding form | 分子名称: | 2-amino-3-ketobutyrate coenzyme A ligase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] | 著者 | Motoyama, T, Nakano, S, Hasebe, F, Miyoshi, N, Ito, S. | 登録日 | 2020-04-20 | 公開日 | 2021-04-21 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Chemoenzymatic synthesis of 3-ethyl-2,5-dimethylpyrazine by L-threonine 3-dehydrogenase and 2-amino-3-ketobutyrate CoA ligase/L-threonine aldolase Commun Chem, 4, 2021
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7BXQ
| 2-amino-3-ketobutyrate CoA ligase from Cupriavidus necator L-Threonine binding form | 分子名称: | 2-amino-3-ketobutyrate coenzyme A ligase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-allothreonine | 著者 | Motoyama, T, Nakano, S, Hasebe, F, Miyoshi, N, Ito, S. | 登録日 | 2020-04-20 | 公開日 | 2021-04-21 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.49 Å) | 主引用文献 | Chemoenzymatic synthesis of 3-ethyl-2,5-dimethylpyrazine by L-threonine 3-dehydrogenase and 2-amino-3-ketobutyrate CoA ligase/L-threonine aldolase Commun Chem, 4, 2021
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7BXP
| 2-amino-3-ketobutyrate CoA ligase from Cupriavidus necator | 分子名称: | 2-amino-3-ketobutyrate coenzyme A ligase | 著者 | Motoyama, T, Nakano, S, Hasebe, F, Miyoshi, N, Ito, S. | 登録日 | 2020-04-20 | 公開日 | 2021-04-21 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Chemoenzymatic synthesis of 3-ethyl-2,5-dimethylpyrazine by L-threonine 3-dehydrogenase and 2-amino-3-ketobutyrate CoA ligase/L-threonine aldolase Commun Chem, 4, 2021
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7BXR
| 2-amino-3-ketobutyrate CoA ligase from Cupriavidus necator 3-Hydroxynorvaline binding form | 分子名称: | (2S,3R)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid, 2-amino-3-ketobutyrate coenzyme A ligase | 著者 | Motoyama, T, Nakano, S, Hasebe, F, Miyoshi, N, Ito, S. | 登録日 | 2020-04-20 | 公開日 | 2021-04-21 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Chemoenzymatic synthesis of 3-ethyl-2,5-dimethylpyrazine by L-threonine 3-dehydrogenase and 2-amino-3-ketobutyrate CoA ligase/L-threonine aldolase Commun Chem, 4, 2021
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3WEU
| Crystal structure of the L-Lys epsilon-oxidase from Marinomonas mediterranea | 分子名称: | 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, L-lysine 6-oxidase, ... | 著者 | Okazaki, S, Nakano, S, Matsui, D, Akaji, S, Inagaki, K, Asano, Y. | 登録日 | 2013-07-12 | 公開日 | 2013-09-04 | 実験手法 | X-RAY DIFFRACTION (1.93 Å) | 主引用文献 | X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea J.Biochem., 154, 2013
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3WEV
| Crystal structure of the Schiff base intermediate of L-Lys epsilon-oxidase from Marinomonas mediterranea with L-Lys | 分子名称: | 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, L-lysine 6-oxidase, ... | 著者 | Okazaki, S, Nakano, S, Matsui, D, Akaji, S, Inagaki, K, Asano, Y. | 登録日 | 2013-07-12 | 公開日 | 2013-09-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.98 Å) | 主引用文献 | X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea J.Biochem., 154, 2013
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7EPS
| Partial Consensus L-threonine 3-dehydrogenase (E-change) | 分子名称: | 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | 著者 | Kozuka, K, Nakano, S, Asano, Y, Ito, S. | 登録日 | 2021-04-27 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.102 Å) | 主引用文献 | Partial Consensus Design and Enhancement of Protein Function by Secondary-Structure-Guided Consensus Mutations. Biochemistry, 60, 2021
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7EPR
| Partial Consensus L-threonine 3-dehydrogenase (C-Change) | 分子名称: | L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Kozuka, K, Nakano, S, Asano, Y, Ito, S. | 登録日 | 2021-04-27 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Partial Consensus Design and Enhancement of Protein Function by Secondary-Structure-Guided Consensus Mutations. Biochemistry, 60, 2021
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7CGV
| Full consensus L-threonine 3-dehydrogenase, FcTDH-IIYM (NAD+ bound form) | 分子名称: | Artificial L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Hiramatsu, N, Asano, Y, Nakano, S, Ito, S. | 登録日 | 2020-07-02 | 公開日 | 2020-10-28 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.38 Å) | 主引用文献 | Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties. Biochemistry, 59, 2020
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3WGT
| Crystal structure of D-amino acid oxidase mutant | 分子名称: | (1R)-1-phenylethanamine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ... | 著者 | Yasukawa, K, Nakano, S, Asano, Y. | 登録日 | 2013-08-09 | 公開日 | 2014-04-02 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Tailoring D-amino acid oxidase from the pig kidney to R-stereoselective amine oxidase and its use in the deracemization of alpha-methylbenzylamine. Angew.Chem.Int.Ed.Engl., 53, 2014
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3IHQ
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6KFD
| Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis, complexed with iodoacetate | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Hydroxynitrile lyase, iodoacetic acid | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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6JHC
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6KFC
| Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis, complexed with cyanide ion | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CYANIDE ION, Hydroxynitrile lyase, ... | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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6KFA
| Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis bound with acetate | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Hydroxynitrile lyase | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2021-06-23 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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6KFE
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6KFB
| Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis bound with thiocyanate | 分子名称: | Hydroxynitrile lyase, THIOCYANATE ION, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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