7YMP
 
 | | Crystal structure of lysoplasmalogen specific phospholipase D | | 分子名称: | Lysoplasmalogenase | | 著者 | Murayama, K, Kato-Murayama, M, Sugimori, D, Shirouzu, M, Hamana, H. | | 登録日 | 2022-07-29 | | 公開日 | 2023-02-08 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.57 Å) | | 主引用文献 | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Biosci.Biotechnol.Biochem., 87, 2022
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3AU3
 | | Crystal structure of armadillo repeat domain of APC | | 分子名称: | Adenomatous polyposis coli protein | | 著者 | Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2011-01-28 | | 公開日 | 2011-11-02 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
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9J4H
 | | Crystal structure of SHMT apo form | | 分子名称: | Serine hydroxymethyltransferase, TRIETHYLENE GLYCOL | | 著者 | Murayama, K, Hayashi, H. | | 登録日 | 2024-08-09 | | 公開日 | 2024-10-09 | | 実験手法 | X-RAY DIFFRACTION (2.04 Å) | | 主引用文献 | SHIN-2 exerts potent activity against VanA-type vancomycin-resistant Enterococcus faecium in vitro by stabilizing the active site loop of serine hydroxymethyltransferase.
Arch.Biochem.Biophys., 761, 2024
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7CNE
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3QHE
 | | Crystal structure of the complex between the armadillo repeat domain of adenomatous polyposis coli and the tyrosine-rich domain of Sam68 | | 分子名称: | Adenomatous polyposis coli protein, KH domain-containing, RNA-binding, ... | | 著者 | Morishita, E.C.J, Murayama, K, Kato-Murayama, M, Ishizuku-Katsura, Y, Tomabechi, Y, Terada, T, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2011-01-25 | | 公開日 | 2011-11-02 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
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5Y7Z
 | | Complex structure of cyclin G-associated kinase with gefitinib | | 分子名称: | Cyclin-G-associated kinase, Gefitinib, NANOBODY, ... | | 著者 | Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M. | | 登録日 | 2017-08-18 | | 公開日 | 2018-08-29 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.804 Å) | | 主引用文献 | Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
ChemistryOpen, 7, 2018
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5Y80
 | | Complex structure of cyclin G-associated kinase with gefitinib | | 分子名称: | Cyclin-G-associated kinase, Gefitinib, NANOBODY | | 著者 | Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M. | | 登録日 | 2017-08-18 | | 公開日 | 2018-08-29 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
ChemistryOpen, 7, 2018
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8I5L
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1J27
 | | Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7A resolution | | 分子名称: | hypothetical protein TT1725 | | 著者 | Seto, A, Shirouzu, M, Terada, T, Murayama, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2002-12-26 | | 公開日 | 2003-12-02 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution
Proteins, 53, 2003
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7JKV
 | | Crystal Structure of SARS-CoV-2 main protease in complex with an inhibitor GRL-2420 | | 分子名称: | 3C-like proteinase, N-[(2S)-1-({(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide, PENTAETHYLENE GLYCOL | | 著者 | Bulut, H, Hattori, S.I, Das, D, Murayama, K, Mitsuya, H. | | 登録日 | 2020-07-29 | | 公開日 | 2020-09-23 | | 最終更新日 | 2023-10-18 | | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | | 主引用文献 | A small molecule compound with an indole moiety inhibits the main protease of SARS-CoV-2 and blocks virus replication.
Nat Commun, 12, 2021
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1ZPW
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1Z54
 | | Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus | | 分子名称: | GLYCEROL, probable thioesterase | | 著者 | Ihsanawati, Kaminishi, T, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2005-03-17 | | 公開日 | 2005-09-17 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus
TO BE PUBLISHED
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9J4G
 | | Crystal structure of SHMT from E. faecium with (+)-SHIN-2 | | 分子名称: | (+)-SHIN-2, Serine hydroxymethyltransferase, [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE | | 著者 | Hayashi, H, Murayama, K. | | 登録日 | 2024-08-09 | | 公開日 | 2024-10-09 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | SHIN-2 exerts potent activity against VanA-type vancomycin-resistant Enterococcus faecium in vitro by stabilizing the active site loop of serine hydroxymethyltransferase.
Arch.Biochem.Biophys., 761, 2024
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7YM0
 | | Lysoplasmalogen-specific phospholipase D (LyPls-PLD) with Ca2+ | | 分子名称: | CALCIUM ION, Lysoplasmalogenase | | 著者 | Yasutake, Y, Sakasegawa, S, Sugimori, D, Murayama, K. | | 登録日 | 2022-07-27 | | 公開日 | 2023-01-04 | | 最終更新日 | 2024-10-16 | | 実験手法 | X-RAY DIFFRACTION (2.91 Å) | | 主引用文献 | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Biosci.Biotechnol.Biochem., 87, 2022
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2PSM
 | | Crystal structure of Interleukin 15 in complex with Interleukin 15 receptor alpha | | 分子名称: | BENZAMIDINE, Interleukin-15, Interleukin-15 receptor alpha chain | | 著者 | Olsen, S.K, Murayama, K, Kishishita, S, Kukimoto-Niino, M, Terada, T, Shirouzu, M, Ota, N, Kanagawa, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-05-07 | | 公開日 | 2007-11-06 | | 最終更新日 | 2024-10-16 | | 実験手法 | X-RAY DIFFRACTION (2.19 Å) | | 主引用文献 | Crystal Structure of the Interleukin-15{middle dot}Interleukin-15 Receptor {alpha} Complex: INSIGHTS INTO TRANS AND CIS PRESENTATION
J.Biol.Chem., 282, 2007
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2CWK
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2DXF
 | | Crystal structure of nucleoside diphosphate kinase in complex with GTP analog | | 分子名称: | CHLORIDE ION, Nucleoside diphosphate kinase, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-08-25 | | 公開日 | 2007-02-25 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of nucleoside diphosphate kinase in complex with GTP analog
To be Published
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2DY9
 | | Crystal structure of nucleoside diphosphate kinase in complex with ADP | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-09-08 | | 公開日 | 2007-03-08 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | | 主引用文献 | Crystal structure of nucleoside diphosphate kinase in complex with ADP
To be Published
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2DXA
 | | Crystal structure of trans editing enzyme ProX from E.coli | | 分子名称: | CHLORIDE ION, Protein ybaK | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-08-25 | | 公開日 | 2007-02-25 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | | 主引用文献 | Crystal structure of trans editing enzyme ProX from E.coli
To be Published
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2DYC
 | | Crystal structure of the N-terminal domain of mouse galectin-4 | | 分子名称: | Galectin-4 | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-09-08 | | 公開日 | 2007-10-16 | | 最終更新日 | 2024-10-09 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal structure of the N-terminal domain of mouse galectin-4
To be Published
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2DXD
 | | Crystal structure of nucleoside diphosphate kinase in complex with ATP analog | | 分子名称: | ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nucleoside diphosphate kinase | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-08-25 | | 公開日 | 2007-02-25 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | | 主引用文献 | Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
To be Published
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2DYA
 | | Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-09-08 | | 公開日 | 2007-03-08 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | | 主引用文献 | Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
To be Published
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2DXE
 | | Crystal structure of nucleoside diphosphate kinase in complex with GDP | | 分子名称: | CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-08-25 | | 公開日 | 2007-02-25 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of nucleoside diphosphate kinase in complex with GDP
To be Published
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2CYE
 | | Crystal structure of Thioesterase complexed with coenzyme A and Zn from Thermus thermophilus HB8 | | 分子名称: | COENZYME A, Putative thioesterase, ZINC ION | | 著者 | Hosaka, T, Kato-Murayama, M, Murayama, K, Kishishita, S, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2005-07-06 | | 公開日 | 2006-01-06 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta Crystallogr.,Sect.D, 65, 2009
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1UF3
 | | Crystal structure of TT1561 of thermus thermophilus HB8 | | 分子名称: | CALCIUM ION, hypothetical protein TT1561 | | 著者 | Kato-Murayama, M, Shirouzu, M, Terada, T, Murayama, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2003-05-23 | | 公開日 | 2003-11-23 | | 最終更新日 | 2024-10-16 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structure of TT1561 of thermus thermophilus HB8
To be Published
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