5CNX
 
 | | Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12 | | 分子名称: | Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ... | | 著者 | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | | 登録日 | 2015-07-18 | | 公開日 | 2016-07-20 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
Proteins, 2018
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5CIK
 | | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition | | 分子名称: | CITRIC ACID, GLYCEROL, Proline dipeptidase | | 著者 | Kumar, A, Are, V, Ghosh, B, Agrawal, U, Jamdar, S, Makde, R.D. | | 登録日 | 2015-07-13 | | 公開日 | 2016-07-20 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
To Be Published
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5Z47
 | | Crystal structure of pyrrolidone carboxylate peptidase I with disordered loop A from Deinococcus radiodurans R1 | | 分子名称: | DIMETHYL SULFOXIDE, Pyrrolidone-carboxylate peptidase | | 著者 | Agrawal, R, Kumar, A, Kumar, A, Makde, R.D. | | 登録日 | 2018-01-10 | | 公開日 | 2019-01-16 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structures of pyrrolidone-carboxylate peptidase I from Deinococcus radiodurans reveal the mechanism of L-pyroglutamate recognition.
Acta Crystallogr D Struct Biol, 75, 2019
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5YZO
 | | Crystal structure of S9 peptidase mutant (S514A) from Deinococcus radiodurans R1 | | 分子名称: | Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ... | | 著者 | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | | 登録日 | 2017-12-15 | | 公開日 | 2018-11-14 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
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5YZN
 | | Crystal structure of S9 peptidase (active form) from Deinococcus radiodurans R1 | | 分子名称: | Acyl-peptide hydrolase, putative | | 著者 | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | | 登録日 | 2017-12-15 | | 公開日 | 2018-11-14 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
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6A4R
 | | Crystal structure of aspartate bound peptidase E from Salmonella enterica | | 分子名称: | ASPARTIC ACID, Peptidase E | | 著者 | Yadav, P, Chandravanshi, K, Goyal, V.D, Singh, R, Kumar, A, Gokhale, S.M, Makde, R.D. | | 登録日 | 2018-06-20 | | 公開日 | 2018-10-24 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.828 Å) | | 主引用文献 | Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
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6A8M
 | | N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii) | | 分子名称: | FACT complex subunit SPT16 | | 著者 | Gaur, N.K, Are, V.N, Durani, V, Ghosh, B, Kumar, A, Kulkarni, K, Makde, R.D. | | 登録日 | 2018-07-09 | | 公開日 | 2018-08-15 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Evolutionary conservation of protein dynamics: insights from all-atom molecular dynamics simulations of 'peptidase' domain of Spt16.
J.Biomol.Struct.Dyn., 2021
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5ZWT
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5ZWS
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6A8Z
 | | Crystal structure of M1 zinc metallopeptidase from Deinococcus radiodurans | | 分子名称: | SODIUM ION, TYROSINE, ZINC ION, ... | | 著者 | Agrawal, R, Kumar, A, Makde, R.D. | | 登録日 | 2018-07-11 | | 公開日 | 2019-07-17 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.045 Å) | | 主引用文献 | Two-domain aminopeptidase of M1 family: Structural features for substrate binding and gating in absence of C-terminal domain.
J.Struct.Biol., 208, 2019
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6A9U
 | | Crystal strcture of Icp55 from Saccharomyces cerevisiae bound to apstatin inhibitor | | 分子名称: | Intermediate cleaving peptidase 55, MANGANESE (II) ION, apstatin | | 著者 | Singh, R, Kumar, A, Goyal, V.D, Makde, R.D. | | 登録日 | 2018-07-16 | | 公開日 | 2019-01-16 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
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6A9V
 | | Crystal structure of Icp55 from Saccharomyces cerevisiae (N-terminal 42 residues deletion) | | 分子名称: | GLYCINE, Intermediate cleaving peptidase 55, MANGANESE (II) ION, ... | | 著者 | Singh, R, Kumar, A, Goyal, V.D, Makde, R.D. | | 登録日 | 2018-07-16 | | 公開日 | 2019-01-16 | | 最終更新日 | 2024-03-27 | | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | | 主引用文献 | Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
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6A4T
 | | Crystal structure of Peptidase E from Deinococcus radiodurans R1 | | 分子名称: | Peptidase E | | 著者 | Yadav, P, Goyal, V.G, Kumar, A, Gokhale, S.M, Makde, R.D. | | 登録日 | 2018-06-20 | | 公開日 | 2019-06-26 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Catalytic triad heterogeneity in S51 peptidase family: Structural basis for functional variability.
Proteins, 87, 2019
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6A9T
 | | Crystal structure of Icp55 from Saccharomyces cerevisiae (N-terminal 58 residues deletion) | | 分子名称: | GLYCINE, Intermediate cleaving peptidase 55, MANGANESE (II) ION, ... | | 著者 | Singh, R, Kumar, A, Goyal, V.D, Makde, R.D. | | 登録日 | 2018-07-16 | | 公開日 | 2019-01-16 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | | 主引用文献 | Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
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5Z40
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5YZM
 | | Crystal structure of S9 peptidase (inactive form) from Deinococcus radiodurans R1 | | 分子名称: | ACETATE ION, Acyl-peptide hydrolase, putative | | 著者 | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | | 登録日 | 2017-12-15 | | 公開日 | 2018-11-14 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
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5Z48
 | | Crystal structure of pyrrolidone carboxylate peptidase I from Deinococcus radiodurans R1 bound to pyroglutamate | | 分子名称: | DIMETHYL SULFOXIDE, PYROGLUTAMIC ACID, Pyrrolidone-carboxylate peptidase, ... | | 著者 | Agrawal, R, Kumar, A, Kumar, A, Makde, R.D. | | 登録日 | 2018-01-10 | | 公開日 | 2019-01-16 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.551 Å) | | 主引用文献 | Crystal structures of pyrrolidone-carboxylate peptidase I from Deinococcus radiodurans reveal the mechanism of L-pyroglutamate recognition.
Acta Crystallogr D Struct Biol, 75, 2019
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6A4S
 | | Crystal structure of peptidase E with ordered active site loop from Salmonella enterica | | 分子名称: | Peptidase E | | 著者 | Yadav, P, Chandravanshi, K, Goyal, V.D, Singh, R, Kumar, A, Gokhale, S.M, Makde, R.D. | | 登録日 | 2018-06-20 | | 公開日 | 2018-10-31 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
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5CE6
 | | N-terminal domain of FACT complex subunit SPT16 from Cicer arietinum (chickpea) | | 分子名称: | ACETATE ION, FACT-Spt16, POTASSIUM ION, ... | | 著者 | Are, V.N, Ghosh, B, Kumar, A, Makde, R. | | 登録日 | 2015-07-06 | | 公開日 | 2016-04-13 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure and dynamics of Spt16N-domain of FACT complex from Cicer arietinum.
Int.J.Biol.Macromol., 88, 2016
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4DG7
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