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5AZF
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BU of 5azf by Molmil
Crystal structure of LGG-1 complexed with a WEEL peptide
分子名称: CADMIUM ION, Protein lgg-1, SULFATE ION, ...
著者Watanabe, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
7VSX
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BU of 7vsx by Molmil
Crystal structure of QL-nanoKAZ (Reverse mutant of nanoKAZ with L18Q and V27L)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, QLnK
著者Tomabechi, Y, Sekine, S, Shirouzu, M, Takamitsu, H, Satoshi, I.
登録日2021-10-27
公開日2022-08-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.698 Å)
主引用文献Reverse mutants of the catalytic 19 kDa mutant protein (nanoKAZ/nanoLuc) from Oplophorus luciferase with coelenterazine as preferred substrate.
Plos One, 17, 2022
7C0E
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BU of 7c0e by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Ono, A, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0D
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BU of 7c0d by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (Hydroxypyruvate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0C
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BU of 7c0c by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Nobuchi, R, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
5ZJ6
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BU of 5zj6 by Molmil
Crystal structure of HCK kinase complexed with a pyrrolo-pyrimidine inhibitor 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
分子名称: 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Tyrosine-protein kinase HCK
著者Tomabechi, Y, Kukimoto-Niino, M, Shirouzu, M.
登録日2018-03-19
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.696 Å)
主引用文献Phosphorylated and non-phosphorylated HCK kinase domains produced by cell-free protein expression.
Protein Expr. Purif., 150, 2018
7EG3
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BU of 7eg3 by Molmil
Crystal structure of the apoAequorin complex with (S)-HM-daCTZ
分子名称: (2~{S})-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-2,3-dihydroinden-1-one, Aequorin-2
著者Tomabechi, Y, Shirouzu, M.
登録日2021-03-24
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
7EG2
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BU of 7eg2 by Molmil
Crystal structure of the apoAequorin complex with (S)-daCTZ
分子名称: (2~{S})-2-(hydroxymethyl)-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-3~{H}-inden-1-one, Aequorin-2
著者Tomabechi, Y, Shirouzu, M.
登録日2021-03-24
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
7C03
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BU of 7c03 by Molmil
Crystal structure of POLArISact(T57S), genetically encoded probe for fluorescent polarization
分子名称: POLArISact(T57S)
著者Tomabechi, Y, Sakai, N, Shirouzu, M.
登録日2020-04-30
公開日2021-03-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献POLArIS, a versatile probe for molecular orientation, revealed actin filaments associated with microtubule asters in early embryos.
Proc.Natl.Acad.Sci.USA, 118, 2021
2E2Y
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BU of 2e2y by Molmil
Crystal Structure of F43W/H64D/V68I Myoglobin
分子名称: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Ohki, T, Ueno, T, Hikage, T, Suzuki, A, Yamane, T, Watanabe, Y.
登録日2006-11-18
公開日2007-10-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Reactivities of oxo and peroxo intermediates studied by hemoprotein mutants
Acc.Chem.Res., 40, 2007
3FI6
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BU of 3fi6 by Molmil
apo-H49AFr with high content of Pd ions
分子名称: CADMIUM ION, Ferritin light chain, PALLADIUM ION, ...
著者Abe, M, Ueno, T, Hirata, K, Suzuki, M, Abe, S, Shimizu, N, Yamaoto, M, Takata, M, Watanabe, Y.
登録日2008-12-11
公開日2009-04-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Process of Accumulation of Metal Ions on the Interior Surface of apo-Ferritin: Crystal Structures of a Series of apo-Ferritins Containing Variable Quantities of Pd(II) Ions
J.Am.Chem.Soc., 131, 2009
3H7G
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BU of 3h7g by Molmil
Apo-FR with AU ions
分子名称: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
著者Abe, M, Ueno, T, Abe, S, Suzuki, M, Goto, T, Toda, Y, Akita, T, Yamada, Y, Watanabe, Y.
登録日2009-04-27
公開日2009-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Preparation and catalytic reaction of Au/Pd bimetallic nanoparticles in apo-ferritin
Chem.Commun.(Camb.), 32, 2009
3NP2
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BU of 3np2 by Molmil
Crystal Structure of Pd(allyl)/apo-E45C/C48A-rHLFr
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
著者Wang, Z, Ueno, T, Abe, S, Takezawa, Y, Aoyagi, H, Hikage, T, Watanabe, Y, Kitagawa, S.
登録日2010-06-27
公開日2010-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin.
Chem.Commun.(Camb.), 47, 2011
3NOZ
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BU of 3noz by Molmil
Crystal Structure of Pd(allyl)/apo-E45C/R52H-rHLFr
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
著者Wang, Z, Ueno, T, Abe, S, Takezawa, Y, Aoyagi, H, Hikage, T, Watanabe, Y, Kitagawa, S.
登録日2010-06-27
公開日2010-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin.
Chem.Commun.(Camb.), 47, 2011
3NP0
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BU of 3np0 by Molmil
Crystal Structure of Pd(allyl)/apo-E45C/H49A/R52H-rHLFr
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
著者Wang, Z, Ueno, T, Abe, S, Takezawa, Y, Aoyagi, H, Hikage, T, Watanabe, Y, Kitagawa, S.
登録日2010-06-27
公開日2010-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin.
Chem.Commun.(Camb.), 47, 2011
2ZG9
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BU of 2zg9 by Molmil
Crystal Structure of Pd(allyl)/apo-H114AFr
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
著者Abe, S, Niemeyer, J, Abe, M, Ueno, T, Hikage, T, Erker, G, Watanabe, Y.
登録日2008-01-18
公開日2008-08-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
J.Am.Chem.Soc., 130, 2008
2ZG8
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BU of 2zg8 by Molmil
Crystal Structure of Pd(allyl)/apo-H49AFr
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
著者Abe, S, Niemeyer, J, Abe, M, Ueno, T, Hikage, T, Erker, G, Watanabe, Y.
登録日2008-01-18
公開日2008-08-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
J.Am.Chem.Soc., 130, 2008
2ZG7
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BU of 2zg7 by Molmil
Crystal Structure of Pd(allyl)/apo-Fr
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
著者Abe, S, Niemeyer, J, Abe, M, Ueno, T, Hikage, T, Erker, G, Watanabe, Y.
登録日2008-01-18
公開日2008-08-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
J.Am.Chem.Soc., 130, 2008
2Z5P
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BU of 2z5p by Molmil
Apo-Fr with low content of Pd ions
分子名称: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
著者Ueno, T, Hirata, K, Abe, M, Suzuki, M, Abe, S, Shimizu, N, Yamamoto, M, Takata, M, Watanabe, Y.
登録日2007-07-16
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
2Z5R
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BU of 2z5r by Molmil
Apo-Fr with high content of Pd ions
分子名称: CADMIUM ION, Ferritin light chain, PALLADIUM ION
著者Ueno, T, Hirata, K, Abe, M, Suzuki, M, Abe, S, Shimizu, N, Yamamoto, M, Takata, M, Watanabe, Y.
登録日2007-07-16
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
2Z5Q
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BU of 2z5q by Molmil
Apo-Fr with intermediate content of Pd ion
分子名称: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
著者Ueno, T, Hirata, K, Abe, M, Suzuki, M, Abe, S, Shimizu, N, Yamamoto, M, Takata, M, Watanabe, Y.
登録日2007-07-16
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
1B9O
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BU of 1b9o by Molmil
HUMAN ALPHA-LACTALBUMIN, LOW TEMPERATURE FORM
分子名称: CALCIUM ION, PROTEIN (ALPHA-LACTALBUMIN)
著者Harata, K, Abe, Y, Muraki, M.
登録日1999-02-14
公開日1999-03-31
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Crystallographic evaluation of internal motion of human alpha-lactalbumin refined by full-matrix least-squares method.
J.Mol.Biol., 287, 1999
1JSF
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BU of 1jsf by Molmil
FULL-MATRIX LEAST-SQUARES REFINEMENT OF HUMAN LYSOZYME
分子名称: LYSOZYME, NITRATE ION
著者Harata, K, Abe, Y, Muraki, M.
登録日1998-01-05
公開日1998-04-29
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion.
Proteins, 30, 1998
1JSE
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BU of 1jse by Molmil
FULL-MATRIX LEAST-SQUARES REFINEMENT OF TURKEY LYSOZYME
分子名称: LYSOZYME, N-PROPANOL
著者Harata, K, Abe, Y, Muraki, M.
登録日1998-01-05
公開日1998-04-29
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion.
Proteins, 30, 1998
1QQ2
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BU of 1qq2 by Molmil
CRYSTAL STRUCTURE OF A MAMMALIAN 2-CYS PEROXIREDOXIN, HBP23.
分子名称: CHLORIDE ION, THIOREDOXIN PEROXIDASE 2
著者Hirotsu, S, Abe, Y, Okada, K, Nagahara, N, Hori, H, Nishino, T, Hakoshima, T.
登録日1999-06-10
公開日1999-10-29
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of a multifunctional 2-Cys peroxiredoxin heme-binding protein 23 kDa/proliferation-associated gene product.
Proc.Natl.Acad.Sci.USA, 96, 1999

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