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3H39
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BU of 3h39 by Molmil
The complex structure of CCA-adding enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.854 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
5HC9
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BU of 5hc9 by Molmil
Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA
分子名称: MAGNESIUM ION, tRNA nucleotidyl transferase-related protein, tRNAphe
著者Yamashita, S, Tomita, K.
登録日2016-01-04
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme
Structure, 24, 2016
4WC3
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BU of 4wc3 by Molmil
Structure of tRNA-processing enzyme complex 1
分子名称: Poly A polymerase, RNA 76-mer
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC2
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BU of 4wc2 by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Poly A polymerase, ...
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC1
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BU of 4wc1 by Molmil
Structure of tRNA-processing enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC7
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BU of 4wc7 by Molmil
Structure of tRNA-processing enzyme complex 5
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0A
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BU of 4x0a by Molmil
Structure of tRNA-processing enzyme complex 6
分子名称: Poly A polymerase, RNA (73-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.505 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0B
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BU of 4x0b by Molmil
Structure of tRNA-processing enzyme complex 7
分子名称: Poly A polymerase, RNA (77-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4FWT
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BU of 4fwt by Molmil
Complex structure of viral RNA polymerase form III
分子名称: CALCIUM ION, Elongation factor Ts, Elongation factor Tu, ...
著者Takeshita, D, Tomita, K.
登録日2012-07-02
公開日2012-08-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Mechanism for template-independent terminal adenylation activity of Q beta replicase
Structure, 20, 2012
7VNX
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BU of 7vnx by Molmil
Crystal structure of TkArkI
分子名称: GUANOSINE, TkArkI
著者Yamashita, S, Minowa, K, Ohira, T, Suzuki, T, Tomita, K.
登録日2021-10-12
公開日2022-05-04
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
2DPT
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BU of 2dpt by Molmil
Leucyl/phenylalanyl-tRNA-protein transferase complexed with puromycin
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA--protein transferase, PUROMYCIN
著者Suto, K, Shimizu, Y, Tomita, K.
登録日2006-05-14
公開日2007-01-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Embo J., 25, 2006
2DPS
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BU of 2dps by Molmil
Structure of Leucyl/phenylalanyl-tRNA-protein transferase
分子名称: Leucyl/phenylalanyl-tRNA--protein transferase
著者Suto, K, Shimizu, Y, Tomita, K.
登録日2006-05-14
公開日2007-01-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Embo J., 25, 2006
7VMC
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BU of 7vmc by Molmil
Crystal structure of EF-Tu/CdiA/CdiI
分子名称: Contact-dependent inhibitor I, Elongation factor Tu, tRNA nuclease CdiA
著者Wang, J, Yashiro, Y, Tomita, K.
登録日2021-10-08
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.413 Å)
主引用文献Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors.
Nucleic Acids Res., 50, 2022
5Y0P
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BU of 5y0p by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
分子名称: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0S
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BU of 5y0s by Molmil
Crystal structure of apo Thermotoga maritima TmcAL(Form II)
分子名称: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0R
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BU of 5y0r by Molmil
Crystal structure of Thermotoga maritima TmcAL (apo, form I)
分子名称: TmTmcAL(SeMet)
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2018-12-26
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0N
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BU of 5y0n by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
分子名称: ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2018-12-26
実験手法X-RAY DIFFRACTION (2.302 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0Q
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BU of 5y0q by Molmil
Crystal structure of BsTmcAL bound with AMPCPP
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0O
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BU of 5y0o by Molmil
Crystal structure of apo BsTmcAL
分子名称: UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0T
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BU of 5y0t by Molmil
Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ...
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
7BYY
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BU of 7byy by Molmil
Crystal structure of bacterial toxin
分子名称: Acetyltransferase
著者Zhang, C, Yashiro, Y, Tomita, K.
登録日2020-04-25
公開日2020-06-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs.
Nucleic Acids Res., 48, 2020
7CHD
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BU of 7chd by Molmil
AtaT complexed with acetyl-methionyl-tRNAfMet
分子名称: N-acetyltransferase domain-containing protein, RNA (77-MER)
著者Yashiro, Y, Tomita, K.
登録日2020-07-05
公開日2020-11-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.804 Å)
主引用文献Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli.
Nat Commun, 11, 2020
7F36
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BU of 7f36 by Molmil
TacT complexed with acetyl-glycyl-tRNAGly
分子名称: ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ...
著者Yashiro, Y, Tomita, K.
登録日2021-06-15
公開日2021-12-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.098 Å)
主引用文献Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium
Cell Rep, 37, 2021
7F37
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BU of 7f37 by Molmil
Crystal structure of AtaT2-AtaR2 complex
分子名称: DUF1778 domain-containing protein, GNAT family N-acetyltransferase
著者Yashiro, Y, Tomita, K.
登録日2021-06-15
公開日2021-12-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.896 Å)
主引用文献Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium
Cell Rep, 37, 2021
3AQM
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BU of 3aqm by Molmil
Structure of bacterial protein (form II)
分子名称: MAGNESIUM ION, Poly(A) polymerase
著者Toh, Y, Takeshita, D, Tomita , K.
登録日2010-11-09
公開日2011-02-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases
Structure, 19, 2011

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