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7PNT
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BU of 7pnt by Molmil
Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Tfb1m
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNW
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BU of 7pnw by Molmil
Mouse mitochondrial ribosome small subunit lacking m5U modification
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNU
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BU of 7pnu by Molmil
Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA inward conformation
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PO1
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BU of 7po1 by Molmil
Initiation complex of human mitochondrial ribosome small subunit with IF3
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.92 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNV
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BU of 7pnv by Molmil
Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Mettl15
分子名称: 12S mitochondrial rRNA, 12S rRNA N4-methylcytidine methyltransferase, 28S ribosomal protein S10, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PO2
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BU of 7po2 by Molmil
Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNX
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BU of 7pnx by Molmil
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a
分子名称: 12S mitochondrial rRNA, 12S rRNA N4-methylcytidine (m4C) methyltransferase, 28S ribosomal protein S10, ...
著者Itoh, Y, Khawaja, A, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
6ZM5
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BU of 6zm5 by Molmil
Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
分子名称: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
著者Itoh, Y, Andrell, J, Amunts, A.
登録日2020-07-01
公開日2021-01-13
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献Mechanism of membrane-tethered mitochondrial protein synthesis.
Science, 371, 2021
6ZM6
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BU of 6zm6 by Molmil
Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA
分子名称: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
著者Itoh, Y, Andrell, J, Amunts, A.
登録日2020-07-01
公開日2021-01-13
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.59 Å)
主引用文献Mechanism of membrane-tethered mitochondrial protein synthesis.
Science, 371, 2021
3X29
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BU of 3x29 by Molmil
CRYSTAL STRUCTURE of MOUSE CLAUDIN-19 IN COMPLEX with C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN
分子名称: Claudin-19, Heat-labile enterotoxin B chain
著者Saitoh, Y, Suzuki, H, Tani, K, Nishikawa, K, Irie, K, Ogura, Y, Tamura, A, Tsukita, S, Fujiyoshi, Y.
登録日2014-12-13
公開日2015-01-21
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Structural insight into tight junction disassembly by Clostridium perfringens enterotoxin
Science, 347, 2015
4ZU9
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BU of 4zu9 by Molmil
Crystal structure of bacterial selenocysteine-specific elongation factor EF-Sec
分子名称: CYSTEINE, Elongation factor SelB, MAGNESIUM ION, ...
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2015-05-15
公開日2015-09-23
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (3.191 Å)
主引用文献Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB
Nucleic Acids Res., 43, 2015
2DQ3
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BU of 2dq3 by Molmil
Crystal structure of aq_298
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-18
公開日2007-06-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of aq_298
To be Published
2DQ0
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BU of 2dq0 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with a seryl-adenylate analog
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, SULFATE ION, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-18
公開日2007-06-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
3W1H
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BU of 3w1h by Molmil
Crystal structure of the selenocysteine synthase SelA from Aquifex aeolicus
分子名称: L-seryl-tRNA(Sec) selenium transferase
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.893 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1J
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BU of 3w1j by Molmil
Crystal structure of the N-terminal truncated selenocysteine synthase SelA in complex with thiosulfate
分子名称: L-seryl-tRNA(Sec) selenium transferase, POTASSIUM ION, THIOSULFATE
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.252 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1I
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BU of 3w1i by Molmil
Crystal structure of the N-terminal truncated selenocysteine synthase SelA
分子名称: L-seryl-tRNA(Sec) selenium transferase, PLATINUM (II) ION, POTASSIUM ION
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (3.192 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1K
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BU of 3w1k by Molmil
Crystal structure of the selenocysteine synthase SelA and tRNASec complex
分子名称: L-seryl-tRNA(Sec) selenium transferase, selenocysteine tRNA
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (7.5 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W3S
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BU of 3w3s by Molmil
Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, PLATINUM (II) ION, SULFATE ION, ...
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-12-27
公開日2013-02-13
最終更新日2013-08-07
実験手法X-RAY DIFFRACTION (3.095 Å)
主引用文献Tertiary structure of bacterial selenocysteine tRNA
Nucleic Acids Res., 41, 2013
3WCO
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BU of 3wco by Molmil
Crystal structure of the depentamerized mutant of N-terminal truncated selenocysteine synthase SelA
分子名称: L-seryl-tRNA(Sec) selenium transferase, THIOSULFATE
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2013-05-29
公開日2014-01-22
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Dimer-Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity
J.Mol.Biol., 426, 2014
3WCN
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BU of 3wcn by Molmil
Crystal structure of the depentamerized mutant of selenocysteine synthase SelA
分子名称: L-seryl-tRNA(Sec) selenium transferase, THIOSULFATE
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2013-05-29
公開日2014-01-22
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Dimer-Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity
J.Mol.Biol., 426, 2014
2YYE
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BU of 2yye by Molmil
Crystal structure of selenophosphate synthetase from Aquifex aeolicus complexed with AMPCPP
分子名称: COBALT (II) ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, PHOSPHATE ION, ...
著者Itoh, Y, Sekine, S, Matsumoto, E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-29
公開日2008-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs
J.Mol.Biol., 385, 2009
3A3A
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BU of 3a3a by Molmil
Crystal structure of human selenocystine tRNA
分子名称: selenocysteine tRNA
著者Itoh, Y, Chiba, S, Sekine, S.I, Yokoyama, S.
登録日2009-06-11
公開日2009-08-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of human selenocysteine tRNA.
Nucleic Acids Res., 37, 2009
2ZR3
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BU of 2zr3 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii
分子名称: Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-08-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
2ZR2
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BU of 2zr2 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with ATP
分子名称: ADENOSINE MONOPHOSPHATE, SULFATE ION, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-08-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
7CJS
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BU of 7cjs by Molmil
structure of aquaporin
分子名称: Aquaporin NIP2-1, CHOLESTEROL HEMISUCCINATE, SODIUM ION, ...
著者Saitoh, Y, Ma, J.F, Suga, M.
登録日2020-07-13
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for high selectivity of a rice silicon channel Lsi1.
Nat Commun, 12, 2021

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