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3ABM
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BU of 3abm by Molmil
Bovine heart cytochrome c oxidase at the fully oxidized state (200-s X-ray exposure dataset)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Aoyama, H, Muramoto, K, Shinzawa-Itoh, K, Yamashita, E, Tsukihara, T, Ogura, T, Yoshikawa, S.
登録日2009-12-16
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZXW
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BU of 2zxw by Molmil
Bovine heart cytochrome c oxidase at the fully oxidized state (1-s X-ray exposure dataset)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Aoyama, H, Muramoto, K, Shinzawa-Itoh, K, Hirata, K, Yamashita, E, Tsukihara, T, Ogura, T, Yoshikawa, S.
登録日2009-01-08
公開日2009-02-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Proc.Natl.Acad.Sci.USA, 106, 2009
3ABL
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BU of 3abl by Molmil
Bovine heart cytochrome c oxidase at the fully oxidized state (15-s X-ray exposure dataset)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Aoyama, H, Muramoto, K, Shinzawa-Itoh, K, Yamashita, E, Tsukihara, T, Ogura, T, Yoshikawa, S.
登録日2009-12-16
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Proc.Natl.Acad.Sci.USA, 106, 2009
2DEO
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BU of 2deo by Molmil
1510-N membrane protease specific for a stomatin homolog from Pyrococcus horikoshii
分子名称: 441aa long hypothetical nfeD protein
著者Yokoyama, H, Matsui, I.
登録日2006-02-16
公開日2006-05-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular Structure of a Novel Membrane Protease Specific for a Stomatin Homolog from the Hyperthermophilic Archaeon Pyrococcus horikoshii
J.Mol.Biol., 358, 2006
3O59
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BU of 3o59 by Molmil
DNA polymerase D large subunit DP2(1-300) from Pyrococcus horikoshii
分子名称: DNA polymerase II large subunit
著者Yokoyama, H, Shen, Y, Matsui, I.
登録日2010-07-28
公開日2011-01-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Novel structure of an N-terminal domain that is crucial for the dimeric assembly and DNA-binding of an archaeal DNA polymerase D large subunit from Pyrococcus horikoshii
Febs Lett., 585, 2011
6LBW
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BU of 6lbw by Molmil
Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex
分子名称: DNA (5'-D(*CP*GP*(CBR)P*GP*AP*(LCC)P*TP*CP*GP*CP*G)-3'), SILVER ION
著者Aoyama, H, Obika, S, Nakagawa, O.
登録日2019-11-15
公開日2020-11-18
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献Crystallographic Structure of Novel Types of Ag I -Mediated Base Pairs in Non-canonical DNA Duplex Containing 2'-O,4'-C-Methylene Bridged Nucleic Acids.
Chemistry, 27, 2021
8HU5
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BU of 8hu5 by Molmil
Crystal structure of DNA octamer containing GuNA[Me,tBu]
分子名称: DNA (5'-D(*GP*(LR6)P*GP*(BRU)P*AP*CP*AP*C)-3')
著者Aoyama, H, Obika, H, Yamaguchi, T.
登録日2022-12-22
公開日2023-08-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.93 Å)
主引用文献Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids.
Nucleic Acids Res., 51, 2023
8HIS
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BU of 8his by Molmil
Crystal structure of DNA decamer containing GuNA[Me,tBu]
分子名称: CACODYLIC ACID, DNA (5'-D(*GP*CP*GP*TP*AP*(LR6)P*AP*CP*GP*C)-3')
著者Aoyama, H, Obika, S, Yamaguchi, T.
登録日2022-11-21
公開日2023-08-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids.
Nucleic Acids Res., 51, 2023
8I50
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BU of 8i50 by Molmil
Crystal structure of DNA octamer containing GuNA[Me,Me]
分子名称: DNA (5'-D(*GP*(OIQ)P*GP*(BRU)P*AP*CP*AP*C)-3')
著者Aoyama, H, Obika, S, Yamaguchi, T.
登録日2023-01-21
公開日2023-08-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids.
Nucleic Acids Res., 51, 2023
7VCG
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BU of 7vcg by Molmil
Thaumatin protected by alginate gel
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I
著者Muroyama, H, Tomoike, F, Nagae, T, Okada, T.
登録日2021-09-03
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Post-crystallization protection of protein crystals
to be published
1NLU
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BU of 1nlu by Molmil
Pseudomonas sedolisin (serine-carboxyl proteinase) complexed with two molecules of pseudo-iodotyrostatin
分子名称: CALCIUM ION, PSEUDO-IODOTYROSTATIN, SEDOLISIN
著者Wlodawer, A, Li, M, Gustchina, A, Dauter, Z, Uchida, K, Oyama, H, Glodfarb, N.E, Dunn, B.M, Oda, K.
登録日2003-01-07
公開日2004-01-20
最終更新日2012-12-12
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Two inhibitor molecules bound in the active site of Pseudomonas sedolisin: a model for the bi-product complex following cleavage of a peptide substrate.
Biochem.Biophys.Res.Commun., 314, 2004
1GTL
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BU of 1gtl by Molmil
The thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Pro-Phe-cho
分子名称: ALDEHYDE INHIBITOR, CALCIUM ION, KUMAMOLYSIN, ...
著者Comellas-Bigler, M, Fuentes-Prior, P, Maskos, K, Huber, R, Oyama, H, Uchida, K, Dunn, B.M, Oda, K, Bode, W.
登録日2002-01-16
公開日2002-06-13
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GT9
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High resolution crystal structure of a thermostable serine-carboxyl type proteinase, kumamolisin (kscp)
分子名称: CALCIUM ION, KUMAMOLYSIN, SULFATE ION
著者Comellas-Bigler, M, Fuentes-Prior, P, Maskos, K, Huber, R, Oyama, H, Uchida, K, Dunn, B.M, Oda, K, Bode, W.
登録日2002-01-14
公開日2002-06-13
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTJ
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BU of 1gtj by Molmil
Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Ala-Phe-cho
分子名称: ALDEHYDE INHIBITOR, CALCIUM ION, KUMAMOLYSIN, ...
著者Comellas-Bigler, M, Fuentes-Prior, P, Maskos, K, Huber, R, Oyama, H, Uchida, K, Dunn, B.M, Oda, K, Bode, W.
登録日2002-01-15
公開日2002-06-13
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTG
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BU of 1gtg by Molmil
Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolysin (kscp)
分子名称: CALCIUM ION, KUMAMOLYSIN
著者Comellas-Bigler, M, Fuentes-Prior, P, Maskos, K, Huber, R, Oyama, H, Uchida, K, Dunn, B.M, Oda, K, Bode, W.
登録日2002-01-15
公開日2002-06-13
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
6M9C
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BU of 6m9c by Molmil
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR Pseudotyrostatin
分子名称: ACETIC ACID, CALCIUM ION, Pseudotyrostatin, ...
著者Wlodawer, A, Li, M, Gustchina, A, Dauter, Z, Uchida, K, Oyama, H, Goldfarb, N.E, Dunn, B.M, Oda, K.
登録日2018-08-23
公開日2018-10-24
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9F
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PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR Tyrostatin
分子名称: CALCIUM ION, SEDOLISIN, SULFATE ION, ...
著者Wlodawer, A, Li, M, Gustchina, A, Dauter, Z, Uchida, K, Oyama, H, Goldfarb, N.E, Dunn, B.M, Oda, K.
登録日2018-08-23
公開日2018-10-24
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M8Y
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BU of 6m8y by Molmil
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIPF
分子名称: AIPF PEPTIDE INHIBITOR, CALCIUM ION, CHLORIDE ION, ...
著者Wlodawer, A, Li, M, Gustchina, A, Dauter, Z, Uchida, K, Oyama, H, Goldfarb, N.E, Dunn, B.M, Oda, K.
登録日2018-08-22
公開日2018-10-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M8W
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BU of 6m8w by Molmil
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIAF
分子名称: AIAF PEPTIDE INHIBITOR, CALCIUM ION, CHLORIDE ION, ...
著者Wlodawer, A, Li, M, Gustchina, A, Dauter, Z, Uchida, K, Oyama, H, Goldfarb, N.E, Dunn, B.M, Oda, K.
登録日2018-08-22
公開日2018-10-24
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9D
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BU of 6m9d by Molmil
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR Chymostatin
分子名称: CALCIUM ION, Chymostatin A, SEDOLISIN
著者Wlodawer, A, Li, M, Gustchina, A, Dauter, Z, Uchida, K, Oyama, H, Goldfarb, N.E, Dunn, B.M, Oda, K.
登録日2018-08-23
公開日2018-10-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
1SIU
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BU of 1siu by Molmil
KUMAMOLISIN-AS E78H MUTANT
分子名称: CALCIUM ION, SULFATE ION, kumamolisin-As
著者Li, M, Wlodawer, A, Gustchina, A, Tsuruoka, N, Ashida, M, Minakata, H, Oyama, H, Oda, K, Nishino, T, Nakayama, T.
登録日2004-03-01
公開日2004-03-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
J.Biol.Chem., 279, 2004
1SIO
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Structure of Kumamolisin-As complexed with a covalently-bound inhibitor, AcIPF
分子名称: Ace-ILE-PRO-PHL peptide inhibitor, CALCIUM ION, SULFATE ION, ...
著者Li, M, Wlodawer, A, Gustchina, A, Tsuruoka, N, Ashida, M, Minakata, H, Oyama, H, Oda, K, Nishino, T, Nakayama, T.
登録日2004-03-01
公開日2004-03-30
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
J.Biol.Chem., 279, 2004
1S2B
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Structure of SCP-B the first member of the Eqolisin family of Peptidases to have its structure determined
分子名称: Scytalidopepsin B
著者Fujinaga, M, Cherney, M.M, Oyama, H, Oda, K, James, M.N.
登録日2004-01-08
公開日2004-04-27
最終更新日2011-11-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The molecular structure and catalytic mechanism of a novel carboxyl peptidase from Scytalidium lignicolum
Proc.Natl.Acad.Sci.USA, 101, 2004
1S2K
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Structure of SCP-B a member of the Eqolisin family of Peptidases in a complex with a Tripeptide Ala-Ile-His
分子名称: Ala-Ile-His tripeptide, Scytalidopepsin B, TYROSINE
著者Fujinaga, M, Cherney, M.M, Oyama, H, Oda, K, James, M.N.
登録日2004-01-08
公開日2004-04-27
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The molecular structure and catalytic mechanism of a novel carboxyl peptidase from Scytalidium lignicolum
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1G
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High Resolution Crystal Structure of Mutant E23A of Kumamolisin, a sedolisin type proteinase (previously called Kumamolysin or KSCP)
分子名称: CALCIUM ION, SULFATE ION, kumamolisin
著者Comellas-Bigler, M, Maskos, K, Huber, R, Oyama, H, Oda, K, Bode, W.
登録日2004-04-16
公開日2004-08-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004

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