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3X28
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BU of 3x28 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K
分子名称: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-12
公開日2015-12-23
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Reaction intermediate of nitrile hydratase determined by time-resolved crystallography reveals the cysteine-sulfenic acid ligand to be a catalytic nucleophile
To be Published
1WM9
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BU of 1wm9 by Molmil
Structure of GTP cyclohydrolase I from Thermus thermophilus HB8
分子名称: GTP cyclohydrolase I, ZINC ION
著者Tanaka, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-05
公開日2005-07-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.
J.Biochem.(Tokyo), 138, 2005
2DZO
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BU of 2dzo by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
分子名称: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
著者Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-29
公開日2007-10-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
To be Published
2ECF
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BU of 2ecf by Molmil
Crystal Structure of Dipeptidyl Aminopeptidase IV from Stenotrophomonas maltophilia
分子名称: Dipeptidyl peptidase IV
著者Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-02-13
公開日2008-02-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dipeptidyl aminopeptidase IV from Stenotrophomonas maltophilia exhibits activity against a substrate containing a 4-hydroxyproline residue
J.Bacteriol., 190, 2008
3RRX
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BU of 3rrx by Molmil
Crystal Structure of Q683A mutant of Exo-1,3/1,4-beta-glucanase (ExoP) from Pseudoalteromonas sp. BB1
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Exo-1,3/1,4-beta-glucanase, ...
著者Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
登録日2011-05-01
公開日2011-12-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 279, 2012
6LEO
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BU of 6leo by Molmil
Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
著者Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Takeuchi, A, Uchino, S, Sugano, Y.
登録日2019-11-26
公開日2020-09-02
最終更新日2020-09-30
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
6LEP
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BU of 6lep by Molmil
Crystal structure of thiosulfate transporter YeeE inactive mutant - C91A
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
著者Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Sugano, Y, Takeuchi, A, Uchino, S.
登録日2019-11-26
公開日2020-09-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
4HVK
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BU of 4hvk by Molmil
Crystal structure and functional studies of an unusual L-cysteine desulfurase from Archaeoglobus fulgidus.
分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
著者Yamanaka, Y, Zeppieri, L, Nicolet, Y, Marinoni, E.N, de Oliveira, J.S, Masafumi, O, Dean, D.R, Fontecilla-Camps, J.C.
登録日2012-11-06
公開日2012-12-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structure and functional studies of an unusual L-cysteine desulfurase from Archaeoglobus fulgidus.
Dalton Trans, 42, 2013
5AWW
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BU of 5aww by Molmil
Precise Resting State of Thermus thermophilus SecYEG
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Protein translocase subunit SecE, Protein translocase subunit SecY, ...
著者Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
登録日2015-07-10
公開日2015-11-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.724 Å)
主引用文献Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
1WV3
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BU of 1wv3 by Molmil
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
分子名称: CHLORIDE ION, similar to DNA segregation ATPase and related proteins
著者Tanaka, Y, Yasutake, Y, Tanaka, I.
登録日2004-12-10
公開日2005-12-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
6M5Y
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BU of 6m5y by Molmil
Structure of human galectin-1 tandem-repeat mutant with lactose
分子名称: Galectin-1,Galectin-1, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Nonaka, Y, Kamitori, S, Nakamura, T.
登録日2020-03-12
公開日2021-03-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Crystal structure and conformational stability of a galectin-1 tandem-repeat mutant with a short linker.
Glycobiology, 2021
1VBF
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BU of 1vbf by Molmil
Crystal structure of protein L-isoaspartate O-methyltransferase homologue from Sulfolobus tokodaii
分子名称: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
著者Tanaka, Y, Tsumoto, K, Yasutake, Y, Umetsu, M, Yao, M, Tanaka, I, Fukada, H, Kumagai, I.
登録日2004-02-25
公開日2004-08-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII
J.Biol.Chem., 279, 2004
4Z2M
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BU of 4z2m by Molmil
Crystal structure of human SPT16 Mid-AID/H3-H4 tetramer FACT Histone complex
分子名称: FACT complex subunit SPT16, Histone H3.1, Histone H4
著者Tsunaka, Y, Fujiwara, Y, Oyama, T, Hirose, S, Morikawa, K.
登録日2015-03-30
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.981 Å)
主引用文献Integrated molecular mechanism directing nucleosome reorganization by human FACT.
Genes Dev., 30, 2016
4Z2N
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BU of 4z2n by Molmil
Crystal structure of human FACT SPT16 middle domain
分子名称: FACT complex subunit SPT16
著者Tsunaka, Y, Fujiwara, Y, Oyama, T, Hirose, S, Morikawa, K.
登録日2015-03-30
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.923 Å)
主引用文献Integrated molecular mechanism directing nucleosome reorganization by human FACT.
Genes Dev., 30, 2016
5X70
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BU of 5x70 by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer
分子名称: RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3'), mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of capping enzyme from Rice dwarf virus
To Be Published
5X6X
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BU of 5x6x by Molmil
Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
分子名称: 1,2-ETHANEDIOL, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Z
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BU of 5x6z by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Y
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BU of 5x6y by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with S-adenosylmethionine
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, S-ADENOSYLMETHIONINE, ...
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X71
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BU of 5x71 by Molmil
Crystal structure of Rice Dwarf Virus P5 in space group P212121
分子名称: GUANOSINE-5'-MONOPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.568 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
2DSO
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BU of 2dso by Molmil
Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
分子名称: CALCIUM ION, Drp35, GLYCEROL
著者Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
登録日2006-07-04
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG0
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BU of 2dg0 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
分子名称: DrP35
著者Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
登録日2006-03-07
公開日2006-12-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG1
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BU of 2dg1 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+
分子名称: CALCIUM ION, DrP35, GLYCEROL
著者Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
登録日2006-03-07
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
4IC3
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BU of 4ic3 by Molmil
Crystal structure of the F495L mutant XIAP RING domain
分子名称: E3 ubiquitin-protein ligase XIAP, NICKEL (II) ION, ZINC ION
著者Nakatani, Y, Day, C.L.
登録日2012-12-09
公開日2012-12-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.783 Å)
主引用文献Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
Biochem.J., 450, 2013
5WED
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BU of 5wed by Molmil
Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.15A resolution
分子名称: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
著者Nakatani, Y, Aragao, D, Cook, G.M.
登録日2017-07-09
公開日2017-10-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of type II NADH:quinone oxidoreductase from Caldalkalibacillus thermarum with an improved resolution of 2.15 angstrom.
Acta Crystallogr F Struct Biol Commun, 73, 2017
3I4I
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BU of 3i4i by Molmil
Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
分子名称: 1,3-1,4-beta-glucanase, CALCIUM ION
著者Nakatani, Y, Nalder, T.D, Tannock, G.W, Cutfield, J.F, Jack, R.W, Carne, A.
登録日2009-07-01
公開日2010-07-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
To be Published

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