Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6T3U
DownloadVisualize
BU of 6t3u by Molmil
PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Claesson, E, Takala, H, Yuan Wahlgren, W, Pandey, S, Schmidt, M, Westenhoff, S.
登録日2019-10-11
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser.
Elife, 9, 2020
6ZI5
DownloadVisualize
BU of 6zi5 by Molmil
Ultrafast Structural Response to Charge Redistribution Within a Photosynthetic Reaction Centre - 300 ps (a) structure
分子名称: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
著者Baath, P, Dods, R, Braenden, G, Neutze, R.
登録日2020-06-24
公開日2020-12-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ultrafast structural changes within a photosynthetic reaction centre.
Nature, 589, 2021
6ZIA
DownloadVisualize
BU of 6zia by Molmil
Ultrafast Structural Response to Charge Redistribution Within a Photosynthetic Reaction Centre - 8 us structure
分子名称: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
著者Baath, P, Dods, R, Braenden, G, Neutze, R.
登録日2020-06-25
公開日2020-12-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ultrafast structural changes within a photosynthetic reaction centre.
Nature, 589, 2021
7JRI
DownloadVisualize
BU of 7jri by Molmil
High-resolution Crystal Structures of Transient Intermediates in the Phytochrome Photocycle, 33 ms structure
分子名称: 3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
著者Schmidt, M, Stojkovic, E.
登録日2020-08-12
公開日2021-04-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献High-resolution crystal structures of transient intermediates in the phytochrome photocycle.
Structure, 29, 2021
7JR5
DownloadVisualize
BU of 7jr5 by Molmil
Real Time Reaction Intermediates in Stigmatella Bacteriophytochrome P2
分子名称: 3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-5-[[(3~{S})-4-ethyl-3-methyl-2-oxidanylidene-1,3-dihydropyrrol-5-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
著者Schmidt, M.
登録日2020-08-11
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献High-resolution crystal structures of transient intermediates in the phytochrome photocycle.
Structure, 29, 2021
6ZHW
DownloadVisualize
BU of 6zhw by Molmil
Ultrafast Structural Response to Charge Redistribution Within a Photosynthetic Reaction Centre - 1 ps structure
分子名称: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
著者Baath, P, Dods, R, Branden, G, Neutze, R.
登録日2020-06-23
公開日2020-12-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ultrafast structural changes within a photosynthetic reaction centre.
Nature, 589, 2021
6ZI6
DownloadVisualize
BU of 6zi6 by Molmil
Ultrafast Structural Response to Charge Redistribution Within a Photosynthetic Reaction Centre - 20 ps structure
分子名称: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
著者Baath, P, Dods, R, Braenden, G, Neutze, R.
登録日2020-06-24
公開日2020-12-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ultrafast structural changes within a photosynthetic reaction centre.
Nature, 589, 2021
4QX4
DownloadVisualize
BU of 4qx4 by Molmil
Human Aldose Reductase complexed with a ligand with a new scaffold at 1.26 A
分子名称: (3-thioxo-2,3-dihydro-5H-[1,2,4]triazino[5,6-b]indol-5-yl)acetic acid, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Rechlin, C, Heine, A, Klebe, G.
登録日2014-07-18
公開日2015-04-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.259 Å)
主引用文献Identification of novel aldose reductase inhibitors based on carboxymethylated mercaptotriazinoindole scaffold.
J.Med.Chem., 58, 2015
6YVC
DownloadVisualize
BU of 6yvc by Molmil
Crystal structure of the small alarmone hydrolase (SAH) of Pseudomonas aeruginosa
分子名称: Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, MANGANESE (II) ION
著者Altegoer, F, Bange, G.
登録日2020-04-28
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Dual role of a (p)ppGpp- and (p)ppApp-degrading enzyme in biofilm formation and interbacterial antagonism.
Mol.Microbiol., 115, 2021
8AQH
DownloadVisualize
BU of 8aqh by Molmil
NanoLuc-Y94A luciferase mutant
分子名称: NanoLuc luciferase
著者Nemergut, M, Marek, M.
登録日2022-08-12
公開日2023-08-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.798 Å)
主引用文献Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
8AQ6
DownloadVisualize
BU of 8aq6 by Molmil
NanoLuc luciferase with bound furimamide in surface allosteric site
分子名称: CHLORIDE ION, GLYCEROL, N-(3-Benzyl-5-phenylpyrazin-2-yl)-2-(furan-2-yl)acetamide, ...
著者Nemergut, M, Marek, M.
登録日2022-08-11
公開日2023-08-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
8AQI
DownloadVisualize
BU of 8aqi by Molmil
NanoLuc luciferase with bound coelenteramide in surface allosteric site
分子名称: CHLORIDE ION, N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE, NanoLuc luciferase, ...
著者Nemergut, M, Marek, M.
登録日2022-08-12
公開日2023-08-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
8BO9
DownloadVisualize
BU of 8bo9 by Molmil
NanoLuc-D9R/H57A/K89R mutant complexed with azacoelenterazine bound in intra-barrel catalytic site
分子名称: 3-(4-hydroxyphenyl)-8-[(4-hydroxyphenyl)methyl]-5-(phenylmethyl)-1$l^{4},4,7,8-tetrazabicyclo[4.3.0]nona-1(6),2,4-trien-9-one, Non structural polyprotein
著者Marek, M, Janin, L.Y.
登録日2022-11-15
公開日2023-09-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
6TOV
DownloadVisualize
BU of 6tov by Molmil
Crystal Structure of Teicoplanin Aglycone
分子名称: DIMETHYL SULFOXIDE, Teicoplanin Aglycone
著者Belviso, B.D, Carrozzini, B, Caliandro, R, Altomare, C.D, Bolognino, I, Cellamare, S.
登録日2019-12-12
公開日2020-01-15
最終更新日2022-01-19
実験手法X-RAY DIFFRACTION (0.767 Å)
主引用文献Enantiomeric Separation and Molecular Modelling of Bioactive 4-Aryl-3,4-dihydropyrimidin-2(1H)-one Ester Derivatives on Teicoplanin-Based Chiral Stationary Phase
Separations, 2022
1UDR
DownloadVisualize
BU of 1udr by Molmil
CHEY MUTANT WITH LYS 91 REPLACED BY ASP, LYS 92 REPLACED BY ALA, ILE 96 REPLACED BY LYS AND ALA 98 REPLACED BY LEU (STABILIZING MUTATIONS IN HELIX 4)
分子名称: CHEY PROTEIN
著者Parraga, A, Coll, M.
登録日1996-11-05
公開日1997-11-19
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Towards understanding a molecular switch mechanism: thermodynamic and crystallographic studies of the signal transduction protein CheY.
J.Mol.Biol., 303, 2000
4GJI
DownloadVisualize
BU of 4gji by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex with L-rhamnopyranose
分子名称: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION, ...
著者Yoshida, H, Kamitori, S.
登録日2012-08-09
公開日2012-12-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of l-rhamnose isomerase in complex with l-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site.
FEBS Open Bio, 3, 2013
4GJJ
DownloadVisualize
BU of 4gjj by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex with D-allopyranose
分子名称: D-ALLOSE, L-rhamnose isomerase, MANGANESE (II) ION, ...
著者Yoshida, H, Kamitori, S.
登録日2012-08-09
公開日2012-12-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structure of l-rhamnose isomerase in complex with l-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site.
FEBS Open Bio, 3, 2013
1YMU
DownloadVisualize
BU of 1ymu by Molmil
SIGNAL TRANSDUCTION PROTEIN CHEY MUTANT WITH MET 17 REPLACED BY GLY (M17G)
分子名称: CHEY
著者Bellsolell, L, Coll, M.
登録日1995-12-14
公開日1996-04-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The three-dimensional structure of two mutants of the signal transduction protein CheY suggest its molecular activation mechanism.
J.Mol.Biol., 257, 1996
1YMV
DownloadVisualize
BU of 1ymv by Molmil
SIGNAL TRANSDUCTION PROTEIN CHEY MUTANT WITH PHE 14 REPLACED BY GLY, SER 15 REPLACED BY GLY, AND MET 17 REPLACED BY GLY
分子名称: CHEY, MAGNESIUM ION
著者Bellsolell, L, Coll, M.
登録日1995-12-14
公開日1996-04-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The three-dimensional structure of two mutants of the signal transduction protein CheY suggest its molecular activation mechanism.
J.Mol.Biol., 257, 1996
3M0X
DownloadVisualize
BU of 3m0x by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329L in complex with D-psicose
分子名称: D-psicose, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
登録日2010-03-03
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010
3M0H
DownloadVisualize
BU of 3m0h by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with L-rhamnose
分子名称: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
登録日2010-03-03
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010
3M0Y
DownloadVisualize
BU of 3m0y by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329A in complex with L-rhamnose
分子名称: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
登録日2010-03-03
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010
3M0V
DownloadVisualize
BU of 3m0v by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329L in complex with L-rhamnose
分子名称: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
登録日2010-03-03
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010
3M0M
DownloadVisualize
BU of 3m0m by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with D-allose
分子名称: D-ALLOSE, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
登録日2010-03-03
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010
3M0L
DownloadVisualize
BU of 3m0l by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with D-psicose
分子名称: D-psicose, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
登録日2010-03-03
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon