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3A11
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BU of 3a11 by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Translation initiation factor eIF-2B, ...
著者Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3A12
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Crystal structure of Type III Rubisco complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-04-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A43
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Crystal structure of HypA
分子名称: Hydrogenase nickel incorporation protein hypA, ZINC ION
著者Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K.
登録日2009-06-30
公開日2009-10-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A13
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Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-04-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Structure-based optimization of a Type III Rubisco from a hyperthermophile
To be Published
2Z1F
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BU of 2z1f by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (inward form)
分子名称: Hydrogenase expression/formation protein HypE
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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BU of 2z1d by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
分子名称: Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A44
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BU of 3a44 by Molmil
Crystal structure of HypA in the dimeric form
分子名称: Hydrogenase nickel incorporation protein hypA, ZINC ION
著者Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
登録日2009-06-30
公開日2009-10-06
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A9C
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Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, RIBULOSE-1,5-DIPHOSPHATE, ...
著者Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-22
公開日2010-11-03
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
2Z1E
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BU of 2z1e by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (outward form)
分子名称: Hydrogenase expression/formation protein HypE
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
1J0H
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Crystal structure of Bacillus stearothermophilus neopullulanase
分子名称: CALCIUM ION, CHLORIDE ION, neopullulanase
著者Hondoh, H, Kuriki, T, Matsuura, Y.
登録日2002-11-14
公開日2003-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Three-dimensional Structure and Substrate Binding of Bacillus stearothermophilus Neopullulanase
J.Mol.Biol., 326, 2003
1J0K
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Crystal structure of neopullulanase E357Q complex with isopanose
分子名称: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, neopullulanase
著者Hondoh, H, Kuriki, T, Matsuura, Y.
登録日2002-11-14
公開日2003-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase
J.Mol.Biol., 326, 2003
1J0J
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Crystal structure of neopullulanase E357Q complex with maltotetraose
分子名称: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, neopullulanase
著者Hondoh, H, Kuriki, T, Matsuura, Y.
登録日2002-11-14
公開日2003-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase
J.Mol.Biol., 326, 2003
1J0I
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BU of 1j0i by Molmil
Crystal structure of neopullulanase complex with panose
分子名称: alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, neopullulanase
著者Hondoh, H, Kuriki, T, Matsuura, Y.
登録日2002-11-14
公開日2003-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase
J.Mol.Biol., 326, 2003
5XNC
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BU of 5xnc by Molmil
Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with N4-aminopropylspermidine and 5-methylthioadenosine
分子名称: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, DI(HYDROXYETHYL)ETHER, ...
著者Mizohata, E, Tse, K.M, Fujita, J, Inoue, T.
登録日2017-05-22
公開日2018-08-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine.
FEBS J., 284, 2017
1I2H
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BU of 1i2h by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN
分子名称: PSD-ZIP45(HOMER-1C/VESL-1L)
著者Irie, K, Nakatsu, T, Mitsuoka, K, Fujiyoshi, Y, Kato, H.
登録日2001-02-09
公開日2002-05-29
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif
J.Mol.Biol., 318, 2002
5IJA
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[NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis
分子名称: Hydrogenase-specific maturation endopeptidase
著者Kwon, S, Nishitani, Y, Watanabe, S, Miki, K.
登録日2016-03-01
公開日2016-06-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
5XNF
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BU of 5xnf by Molmil
Crystal structure of the branched-chain polyamine synthase (BpsA) from Thermococcus kodakarensis
分子名称: FE (III) ION, GLYCEROL, N(4)-bis(aminopropyl)spermidine synthase, ...
著者Mizohata, E, Tse, K.M, Fujita, J, Inoue, T.
登録日2017-05-22
公開日2018-08-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine.
FEBS J., 284, 2017
5XNH
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BU of 5xnh by Molmil
Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with spermidine
分子名称: FE (III) ION, N(4)-bis(aminopropyl)spermidine synthase, SPERMIDINE
著者Mizohata, E, Tse, K.M, Fujita, J, Inoue, T.
登録日2017-05-22
公開日2017-10-04
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine.
FEBS J., 284, 2017
1B8A
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ASPARTYL-TRNA SYNTHETASE
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, PROTEIN (ASPARTYL-TRNA SYNTHETASE)
著者Schmitt, E, Moulinier, L, Thierry, J.-C, Moras, D.
登録日1999-01-27
公開日1999-02-02
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of aspartyl-tRNA synthetase from Pyrococcus kodakaraensis KOD: archaeon specificity and catalytic mechanism of adenylate formation.
EMBO J., 17, 1998
4QJV
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BU of 4qjv by Molmil
The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis
分子名称: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION
著者Hirata, A, Murakami, K.S.
登録日2014-06-05
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration
Nat Commun, 5, 2014
4QIW
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Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis
分子名称: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ...
著者Jun, S.-H, Murakami, K.S.
登録日2014-06-02
公開日2014-10-08
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.
Nat Commun, 5, 2014
3WQP
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Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis
分子名称: 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ...
著者Fujihashi, M, Nishitani, Y, Kiriyama, T, Miki, K.
登録日2014-01-29
公開日2015-02-04
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Mutation design of thermophilic Rubisco based on the three-dimensional structure enhances its activity at ambient temperature
to be published
5AUP
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Crystal structure of the HypAB complex
分子名称: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUN
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Crystal structure of the HypAB-Ni complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ParA/MinD family, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUO
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Crystal structure of the HypAB-Ni complex (AMPPCP)
分子名称: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015

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件を2025-07-09に公開中

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