7W71
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7W70
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7W6X
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7W6Y
| Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P1 | 分子名称: | 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Anti sigma-E protein, RseA, ... | 著者 | Imaizumi, Y, Takanuki, K, Nogi, T. | 登録日 | 2021-12-02 | 公開日 | 2022-09-07 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
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1JWG
| VHS Domain of human GGA1 complexed with cation-independent M6PR C-terminal Peptide | 分子名称: | ADP-ribosylation factor binding protein GGA1, Cation-independent mannose-6-phosphate receptor, IODIDE ION | 著者 | Shiba, T, Takatsu, H, Nogi, T, Matsugaki, N, Kawasaki, M, Igarashi, N, Suzuki, M, Kato, R, Earnest, T, Nakayama, K, Wakatsuki, S. | 登録日 | 2001-09-04 | 公開日 | 2002-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural basis for recognition of acidic-cluster dileucine sequence by GGA1. Nature, 415, 2002
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7Y4P
| Human Plexin A1, extracellular domains 1-4 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A1 | 著者 | Tanaka, T, Neyazaki, M, Nogi, T. | 登録日 | 2022-06-15 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci., 31, 2022
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7Y4O
| Rat Semaphorin 6D extracellular region | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin 6D | 著者 | Tanaka, T, Neyazaki, M, Nogi, T. | 登録日 | 2022-06-15 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci., 31, 2022
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7Y4Q
| Semaphorin 6D in complex with Plexin A1 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A1, ... | 著者 | Tanaka, T, Neyazaki, M, Nogi, T. | 登録日 | 2022-06-16 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (4.7 Å) | 主引用文献 | Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci., 31, 2022
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1JWF
| Crystal Structure of human GGA1 VHS domain. | 分子名称: | ADP-ribosylation factor binding protein GGA1 | 著者 | Shiba, T, Takatsu, H, Nogi, T, Matsugaki, N, Kawasaki, M, Igarashi, N, Suzuki, M, Kato, R, Earnest, T, Nakayama, K, Wakatsuki, S. | 登録日 | 2001-09-04 | 公開日 | 2002-03-06 | 最終更新日 | 2018-06-20 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structural basis for recognition of acidic-cluster dileucine sequence by GGA1. Nature, 415, 2002
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1J2J
| Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form | 分子名称: | ADP-ribosylation factor 1, ADP-ribosylation factor binding protein GGA1, GUANOSINE-5'-TRIPHOSPHATE, ... | 著者 | Shiba, T, Kawasaki, M, Takatsu, H, Nogi, T, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Nakayama, K, Wakatsuki, S. | 登録日 | 2003-01-05 | 公開日 | 2003-05-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport NAT.STRUCT.BIOL., 10, 2003
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6AL1
| The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 184 | 分子名称: | Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... | 著者 | Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. | 登録日 | 2018-09-05 | 公開日 | 2019-02-13 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
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6AKQ
| The PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267 | 分子名称: | PDZ tandem fragment of A. aeolicus site-2 protease homolog with the PA tag insertion | 著者 | Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. | 登録日 | 2018-09-03 | 公開日 | 2019-02-13 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
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6AL0
| The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267 | 分子名称: | Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... | 著者 | Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. | 登録日 | 2018-09-05 | 公開日 | 2019-02-13 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
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3WSX
| SorLA Vps10p domain in ligand-free form | 分子名称: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, ... | 著者 | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | 登録日 | 2014-03-30 | 公開日 | 2015-02-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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3WSY
| SorLA Vps10p domain in complex with its own propeptide fragment | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor, peptide from Sortilin-related receptor | 著者 | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | 登録日 | 2014-03-30 | 公開日 | 2015-02-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.11 Å) | 主引用文献 | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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3WSZ
| SorLA Vps10p domain in complex with Abeta-derived peptide | 分子名称: | 10-mer peptide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor | 著者 | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | 登録日 | 2014-03-30 | 公開日 | 2015-02-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.201 Å) | 主引用文献 | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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3A7Q
| Structural basis for specific recognition of reelin by its receptors | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | 著者 | Yasui, N, Nogi, T, Takagi, J. | 登録日 | 2009-10-01 | 公開日 | 2010-03-23 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural Basis for Specific Recognition of Reelin by Its Receptors Structure, 18, 2010
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3ASI
| Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-1-alpha | 著者 | Tanaka, H, Nogi, T, Yasui, N, Takagi, J. | 登録日 | 2010-12-13 | 公開日 | 2011-04-13 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin Plos One, 6, 2011
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2ZOU
| Crystal structure of human F-spondin reeler domain (fragment 2) | 分子名称: | 1,2-ETHANEDIOL, Spondin-1 | 著者 | Nagae, M, Nogi, T, Takagi, J. | 登録日 | 2008-06-07 | 公開日 | 2008-10-14 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop Acta Crystallogr.,Sect.D, 64, 2008
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2ZOT
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5GZ8
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5GZ9
| Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide | 分子名称: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein O-mannose kinase, ... | 著者 | Nagae, M, Yamaguchi, Y. | 登録日 | 2016-09-27 | 公開日 | 2017-03-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | 3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy. Genes Cells, 22, 2017
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6A48
| Crystal structure of reelin N-terminal region | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Reelin | 著者 | Nagae, M, Takagi, J. | 登録日 | 2018-06-19 | 公開日 | 2019-06-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization. J.Biochem., 169, 2021
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