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2Z6F
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BU of 2z6f by Molmil
Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme
分子名称: Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING FE
著者Tanaka, Y, Suenaga, A, Tsumoto, K.
登録日2007-07-31
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
2D5W
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BU of 2d5w by Molmil
The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide
分子名称: pentapeptide A, pentapeptide B, peptide ABC transporter, ...
著者Morita, A.
登録日2005-11-07
公開日2006-10-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide
To be Published
2DI3
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BU of 2di3 by Molmil
Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
分子名称: Bacterial regulatory proteins, GntR family, ZINC ION
著者Gao, Y.G, Yao, M, Tanaka, I.
登録日2006-03-28
公開日2007-03-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
7W51
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BU of 7w51 by Molmil
Crystal structure of fragmin domain-1 in complex with actin (ADP-form)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W50
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BU of 7w50 by Molmil
Crystal structure of fragmin domain-1 in complex with actin (ADP-Pi-form)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W4Z
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BU of 7w4z by Molmil
Crystal structure of fragmin domain-1 in complex with actin (AMPPNP-form)
分子名称: 1,2-ETHANEDIOL, Actin, alpha skeletal muscle, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W52
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BU of 7w52 by Molmil
Crystal structure of fragmin domain-1 (15-160) in complex with actin
分子名称: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7YNE
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BU of 7yne by Molmil
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
分子名称: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
著者Takeda, S.
登録日2022-07-30
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
2ZKL
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BU of 2zkl by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
分子名称: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
著者Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
登録日2008-03-25
公開日2009-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
2DDX
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BU of 2ddx by Molmil
Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4
分子名称: GLYCEROL, MAGNESIUM ION, beta-1,3-xylanase
著者Sakaguchi, K.
登録日2006-02-06
公開日2007-02-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Atomic resolution analysis of beta-1,3-xylanase catalytic module from Vibrio sp. AX-4
To be Published
2D5A
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BU of 2d5a by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: COENZYME A, hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2D59
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BU of 2d59 by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2ZOZ
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BU of 2zoz by Molmil
Crystal structure of the ethidium-bound form of the multi-drug binding transcriptional repressor CgmR
分子名称: ETHIDIUM, GLYCEROL, SULFATE ION, ...
著者Itou, H, Shirakihara, Y, Tanaka, I.
登録日2008-06-20
公開日2008-07-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2D5K
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BU of 2d5k by Molmil
Crystal structure of Dps from Staphylococcus aureus
分子名称: Dps family protein, GLYCEROL
著者Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
登録日2005-11-02
公開日2006-10-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages
FEMS Microbiol. Lett., 360, 2014
6J6U
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BU of 6j6u by Molmil
Rat PTPRZ D1-D2 domain
分子名称: Receptor-type tyrosine-protein phosphatase zeta
著者Sugawara, H.
登録日2019-01-15
公開日2019-08-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.32 Å)
主引用文献A head-to-toe dimerization has physiological relevance for ligand-induced inactivation of protein tyrosine receptor type Z.
J.Biol.Chem., 294, 2019
1WV3
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BU of 1wv3 by Molmil
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
分子名称: CHLORIDE ION, similar to DNA segregation ATPase and related proteins
著者Tanaka, Y, Yasutake, Y, Tanaka, I.
登録日2004-12-10
公開日2005-12-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
3VUA
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BU of 3vua by Molmil
Apo IsdH-NEAT3 in space group P3121 at a resolution of 1.85 A
分子名称: ACETATE ION, GLYCEROL, Iron-regulated surface determinant protein H, ...
著者Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
登録日2012-06-26
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
To be Published
3VTM
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BU of 3vtm by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
分子名称: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING INDIUM
著者Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
登録日2012-05-31
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Selective binding of antimicrobial porphyrins to the heme-receptor IsdH-NEAT3 of Staphylococcus aureus
Protein Sci., 22, 2013
7ZOI
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BU of 7zoi by Molmil
Carbohydrate binding domain CBM92-A from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588
分子名称: Glycoside hydrolase family 18
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-25
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOO
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BU of 7zoo by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with gentiobiose
分子名称: Glycoside hydrolase family 18, beta-D-glucopyranose
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-26
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZON
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BU of 7zon by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with glucose
分子名称: Glycoside hydrolase family 18, PENTAETHYLENE GLYCOL, beta-D-glucopyranose
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-26
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOH
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BU of 7zoh by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588
分子名称: Glycoside hydrolase family 18
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-25
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOP
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BU of 7zop by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with sophorose.
分子名称: Glycoside hydrolase family 18, beta-D-glucopyranose
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-26
公開日2023-05-10
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
8A64
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BU of 8a64 by Molmil
cryoEM structure of the catalytically inactive EndoS from S. pyogenes in complex with the Fc region of immunoglobulin G1.
分子名称: Endo-beta-N-acetylglucosaminidase F2, Immunoglobulin gamma-1 heavy chain, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Trastoy, B, Cifuente, J.O, Du, J.J, Sundberg, E.J, Guerin, M.E.
登録日2022-06-16
公開日2023-04-05
最終更新日2023-07-26
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases.
Nat Commun, 14, 2023
6WPU
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BU of 6wpu by Molmil
Structure of S-allyl-L-cysteine S-oxygenase from Allium sativum
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-containing monooxygenase, SULFATE ION
著者Tanner, J.J, Campbell, A.C, Schuermann, J.P.
登録日2020-04-27
公開日2020-06-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.084 Å)
主引用文献Structure and function of a flavin-dependent S-monooxygenase from garlic (Allium sativum).
J.Biol.Chem., 295, 2020

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