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Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3
分子名称:	BROMIDE ION, MERCURY (II) ION, geranylgeranyl pyrophosphate synthetase
著者	Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2005-02-03
公開日	2006-02-14
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3 To be Published

1WXD

Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8
分子名称:	ACETATE ION, SULFATE ION, shikimate 5-dehydrogenase
著者	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2005-01-21
公開日	2005-02-01
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Crystal Structures of Shikimate Dehydrogenase AroE from Thermus thermophilus HB8 and its Cofactor and Substrate Complexes: Insights into the Enzymatic Mechanism J.Mol.Biol., 373, 2007

1X1Q

Crystal structure of tryptophan synthase beta chain from Thermus thermophilus HB8
分子名称:	CHLORIDE ION, tryptophan synthase beta chain
著者	Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2005-04-11
公開日	2006-08-01
最終更新日	2024-10-30
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	Crystal structure of tryptophan synthase beta chain from Thermus thermophilus HB8 To be Published

1WPY

Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with biotin
分子名称:	BIOTIN, biotin--[acetyl-CoA-carboxylase] ligase
著者	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-09-17
公開日	2005-10-04
最終更新日	2024-10-30
実験手法	X-RAY DIFFRACTION (1.6 Å)
主引用文献	Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation J.Mol.Biol., 353, 2005

1WWZ

Crystal structure of PH1933 from Pyrococcus horikoshii OT3
分子名称:	ACETYL COENZYME *A, hypothetical protein PH1933
著者	Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2005-01-19
公開日	2005-02-01
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (1.75 Å)
主引用文献	Crystal structure of PH1933 from Pyrococcus horikoshii OT3 To be Published

1WZN

Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3
分子名称:	MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase, ...
著者	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2005-03-08
公開日	2006-03-14
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3 To be Published

1VDK

Crystal structure of fumarase from thermus thermophilus HB8
分子名称:	Fumarate hydratase class II
著者	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-03-23
公開日	2004-04-13
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Crystal structure of fumarase from thermus thermophilus HB8 To be Published

1VDM

Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3
分子名称:	purine phosphoribosyltransferase
著者	Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-03-23
公開日	2005-05-24
最終更新日	2023-12-27
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3 To be Published

1VSR

VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI
分子名称:	PROTEIN (VSR ENDONUCLEASE), ZINC ION
著者	Tsutakawa, S.E, Muto, T, Jingami, H, Kunishima, N, Ariyoshi, M, Kohda, D, Nakagawa, M, Morikawa, K.
登録日	1999-02-13
公開日	1999-10-27
最終更新日	2023-12-27
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Crystallographic and functional studies of very short patch repair endonuclease. Mol.Cell, 3, 1999

1VE3

Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3
分子名称:	S-ADENOSYLMETHIONINE, hypothetical protein PH0226
著者	Lokanath, N.K, Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-03-26
公開日	2005-05-24
最終更新日	2024-10-30
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Crystal structure of SAM-dependent methyltransferase from Pyrococcus horikoshii. Acta Crystallogr.,Sect.F, 73, 2017

1V6T

Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3
分子名称:	Hypothetical UPF0271 protein PH0986
著者	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2003-12-04
公開日	2004-12-14
最終更新日	2023-12-27
実験手法	X-RAY DIFFRACTION (1.7 Å)
主引用文献	Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3 To be Published

1V9S

Crystal structure of TT0130 protein from Thermus thermophilus HB8
分子名称:	SULFATE ION, uracil phosphoribosyltransferase
著者	Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-01-29
公開日	2005-03-29
最終更新日	2024-10-16
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Crystal structure of uracil phosphoribosyltransferase from Thermus thermophilus HB8 To be Published

1VBI

Crystal structure of type 2 malate/lactate dehydrogenase from thermus thermophilus HB8
分子名称:	1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, ...
著者	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-02-27
公開日	2005-04-19
最終更新日	2023-12-27
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Crystal structure of type 2 malate/lactate dehydrogenase from thermus thermophilus HB8 To be Published

1V7Q

Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8
分子名称:	phosphoglycerate mutase
著者	Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2003-12-22
公開日	2005-02-15
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.59 Å)
主引用文献	Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8 To be Published

1VBK

Crystal structure of PH1313 from Pyrococcus horikoshii Ot3
分子名称:	(4R)-2-METHYLPENTANE-2,4-DIOL, hypothetical protein PH1313
著者	Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-02-27
公開日	2005-04-19
最終更新日	2023-12-27
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Purification, crystallization and preliminary crystallographic analysis of the putative thiamine-biosynthesis protein PH1313 from Pyrococcus horikoshii OT3 Acta Crystallogr.,Sect.F, 63, 2007

1V6S

Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8
分子名称:	GLYCEROL, Phosphoglycerate kinase, SODIUM ION
著者	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2003-12-04
公開日	2003-12-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.5 Å)
主引用文献	Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8 To be Published

1V5X

Crystal structure of Phosphoribosyl anthranilate isomerase from Thermus Thermophilus
分子名称:	Phosphoribosylanthranilate isomerase
著者	Taka, J, Kunishima, N, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2003-11-26
公開日	2003-12-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Stabilization due to dimer formation of phosphoribosyl anthranilate isomerase from Thermus thermophilus HB8: X-ray Analysis and DSC experiments. J.Biochem.(Tokyo), 137, 2005

1V8G

Crystal structure of anthranilate phosphoribosyltransferase (TrpD) from Thermus thermophilus HB8
分子名称:	anthranilate phosphoribosyltransferase
著者	Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2004-01-08
公開日	2004-01-20
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Crystal structure of anthranilate phosphoribosyltransferase (TrpD) from Thermus thermophilus HB8 To be Published

1CK6

BINDING MODE OF SALICYLHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, PROTEIN (PEROXIDASE), ...
著者	Fukuyama, K, Itakura, H.
登録日	1999-04-28
公開日	1999-12-29
最終更新日	2024-10-30
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Binding of salicylhydroxamic acid and several aromatic donor molecules to Arthromyces ramosus peroxidase, investigated by X-ray crystallography, optical difference spectroscopy, NMR relaxation, molecular dynamics, and kinetics. Biochemistry, 38, 1999

1C8I

BINDING MODE OF HYDROXYLAMINE TO ARTHROMYCES RAMOSUS PEROXIDASE
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, HYDROXYAMINE, ...
著者	Wariishi, H, Nonaka, D, Johjima, T, Nakamura, N, Naruta, Y, Kubo, K, Fukuyama, K.
登録日	2000-05-08
公開日	2001-01-17
最終更新日	2024-10-09
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Direct binding of hydroxylamine to the heme iron of Arthromyces ramosus peroxidase. Substrate analogue that inhibits compound I formation in a competetive manner. J.Biol.Chem., 275, 2000

1HSR

BINDING MODE OF BENZHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BENZHYDROXAMIC ACID, CALCIUM ION, ...
著者	Fukuyama, K, Itakura, H.
登録日	1997-07-01
公開日	1998-07-01
最終更新日	2024-11-06
実験手法	X-RAY DIFFRACTION (1.6 Å)
主引用文献	Binding mode of benzhydroxamic acid to Arthromyces ramosus peroxidase shown by X-ray crystallographic analysis of the complex at 1.6 A resolution. FEBS Lett., 412, 1997

1GZA

PEROXIDASE
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, IODIDE ION, ...
著者	Fukuyama, K, Itakura, H.
登録日	1996-11-13
公開日	1997-03-12
最終更新日	2024-10-16
実験手法	X-RAY DIFFRACTION (2.06 Å)
主引用文献	Binding of iodide to Arthromyces ramosus peroxidase investigated with X-ray crystallographic analysis, 1H and 127I NMR spectroscopy, and steady-state kinetics. J.Biol.Chem., 272, 1997

5B34

Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with Iodine-labeled Detergent HAD13a Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA
分子名称:	2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid, Bacteriorhodopsin, DECANE, ...
著者	Mizohata, E, Nakane, T.
登録日	2016-02-10
公開日	2016-11-09
最終更新日	2024-10-30
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent Proc.Natl.Acad.Sci.USA, 113, 2016

5B35

Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA
分子名称:	(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, Bacteriorhodopsin, DECANE, ...
著者	Mizohata, E, Nakane, T, Suzuki, M.
登録日	2016-02-10
公開日	2016-11-09
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2.35 Å)
主引用文献	Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent Proc.Natl.Acad.Sci.USA, 113, 2016

4RVC

Structure of ATP binding subunit of ABC transporter
分子名称:	ABC transporter ATP-binding protein
著者	Manjula, M, Pampa, K.J, Lokanath, N.K.
登録日	2014-11-26
公開日	2015-03-18
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (1.77 Å)
主引用文献	Crystal structure of ATP-binding subunit of an ABC transporter from Geobacillus kaustophilus. Biochem.Biophys.Res.Commun., 459, 2015

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