Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1T4Z
DownloadVisualize
BU of 1t4z by Molmil
Solution structure of the N-terminal domain of Synechococcus elongatus SasA (25-structures ensemble)
Descriptor: Adaptive-response sensory-kinase sasA
Authors:Vakonakis, I, Klewer, D.A, LiWang, A.C.
Deposit date:2004-04-30
Release date:2004-11-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA.
J.Mol.Biol., 342, 2004
1SV1
DownloadVisualize
BU of 1sv1 by Molmil
NMR structure of the ThKaiA180C-CIIABD complex (25-structure ensemble)
Descriptor: Circadian clock protein KaiA, Circadian clock protein KaiC
Authors:Vakonakis, I, LiWang, A.C.
Deposit date:2004-03-26
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1T4Y
DownloadVisualize
BU of 1t4y by Molmil
Solution structure of the N-terminal domain of Synechococcus elongatus SasA (average minimized structure)
Descriptor: Adaptive-response sensory-kinase sasA
Authors:Vakonakis, I, Klewer, D.A, LiWang, A.C.
Deposit date:2004-04-30
Release date:2004-11-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA.
J.Mol.Biol., 342, 2004
2H41
DownloadVisualize
BU of 2h41 by Molmil
Solution structure of the second type III domain of human Fibronectin: minimized average structure
Descriptor: Fibronectin
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2006-05-23
Release date:2007-04-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.
Embo J., 26, 2007
2HA1
DownloadVisualize
BU of 2ha1 by Molmil
Complex of the first and second type III domains of human Fibronectin in solution
Descriptor: Fibronectin
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2006-06-12
Release date:2007-04-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.
Embo J., 26, 2007
2H45
DownloadVisualize
BU of 2h45 by Molmil
Solution structure of the second type III domain of human Fibronectin: ensemble of 25 structures
Descriptor: Fibronectin
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2006-05-23
Release date:2007-04-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.
Embo J., 26, 2007
2JX9
DownloadVisualize
BU of 2jx9 by Molmil
Solution structure of the Gal_lectin domain of mouse Latrophilin-1 GPCR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Latrophilin 1
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2007-11-09
Release date:2008-04-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and sugar-binding mechanism of mouse Latrophilin-1 RBL: a novel 7TM receptor-attached lectin-like domain.
To be Published
2JXA
DownloadVisualize
BU of 2jxa by Molmil
Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Latrophilin 1, alpha-L-rhamnopyranose
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2007-11-09
Release date:2008-04-29
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Solution structure and sugar-binding mechanism of mouse Latrophilin-1 RBL: a novel 7TM receptor-attached lectin-like domain.
To be Published
1Q6A
DownloadVisualize
BU of 1q6a by Molmil
Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Averaged Minimized Structure
Descriptor: Circadian clock protein KaiA homolog
Authors:Vakonakis, I, Sun, J, Holzenburg, A, Golden, S.S, LiWang, A.C.
Deposit date:2003-08-13
Release date:2003-08-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: Implications for KaiA-KaiC interaction
Proc.Natl.Acad.Sci.USA, 101, 2004
1Q6B
DownloadVisualize
BU of 1q6b by Molmil
Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Ensemble of 25 Structures
Descriptor: Circadian clock protein KaiA homolog
Authors:Vakonakis, I, Sun, J, Golden, S.S, Holzenburg, A, LiWang, A.C.
Deposit date:2003-08-13
Release date:2003-08-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction
Proc.Natl.Acad.Sci.USA, 101, 2004
1SUY
DownloadVisualize
BU of 1suy by Molmil
NMR structure of the ThKaiA180C-CIIABD complex (average minimized structure)
Descriptor: circadian clock protein KaiA, circadian clock protein KaiC
Authors:Vakonakis, I, LiWang, A.C.
Deposit date:2004-03-26
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
3PYI
DownloadVisualize
BU of 3pyi by Molmil
Structure of the N-terminal domain of C. elegans SAS-6
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Spindle assembly abnormal protein 6, TETRAETHYLENE GLYCOL
Authors:Vakonakis, I, Steinmetz, M.O.
Deposit date:2010-12-13
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Structural basis of the 9-fold symmetry of centrioles.
Cell(Cambridge,Mass.), 144, 2011
6RZY
DownloadVisualize
BU of 6rzy by Molmil
Plasmodium falciparum PFA0660w Hsp40 co-chaperone J-domain
Descriptor: Heat shock protein 40, type II
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
6RZQ
DownloadVisualize
BU of 6rzq by Molmil
Plasmodium falciparum Hsp70-x chaperone nucleotide binding domain - ANP-PnP bound state
Descriptor: GLYCEROL, Heat shock protein 70, MAGNESIUM ION, ...
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
6S02
DownloadVisualize
BU of 6s02 by Molmil
Plasmodium falciparum Hsp70-x chaperone nucleotide binding domain - ADP bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock protein 70, MAGNESIUM ION
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
2LKL
DownloadVisualize
BU of 2lkl by Molmil
Structure of the core intracellular domain of PfEMP1
Descriptor: Erythrocyte membrane protein 1 (PfEMP1)
Authors:Vakonakis, I, Erat, M.C.
Deposit date:2011-10-16
Release date:2012-01-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Analysis of the Plasmodium falciparum Erythrocyte Membrane Protein 1 (PfEMP1) Intracellular Domain Reveals a Conserved Interaction Epitope.
J.Biol.Chem., 287, 2012
3EJH
DownloadVisualize
BU of 3ejh by Molmil
Crystal Structure of the Fibronectin 8-9FnI Domain Pair in Complex with a Type-I Collagen Peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen type-I a1 chain, Fibronectin, ...
Authors:Erat, M.C, Lowe, E.D, Campbell, I.D, Vakonakis, I.
Deposit date:2008-09-18
Release date:2009-02-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification and structural analysis of type I collagen sites in complex with fibronectin fragments.
Proc.Natl.Acad.Sci.USA, 106, 2009
2VZG
DownloadVisualize
BU of 2vzg by Molmil
Crystal structure of the C-terminal calponin homology domain of alpha- parvin in complex with paxillin LD2 motif
Descriptor: 1,2-ETHANEDIOL, Alpha-parvin, Paxillin, ...
Authors:Lorenz, S, Vakonakis, I, Lowe, E.D, Campbell, I.D, Noble, M.E.M, Hoellerer, M.K.
Deposit date:2008-08-01
Release date:2008-10-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the interactions between paxillin LD motifs and alpha-parvin.
Structure, 16, 2008
2VZD
DownloadVisualize
BU of 2vzd by Molmil
Crystal structure of the C-terminal calponin homology domain of alpha parvin in complex with paxillin LD1 motif
Descriptor: 1,2-ETHANEDIOL, ALPHA-PARVIN, GLYCEROL, ...
Authors:Lorenz, S, Vakonakis, I, Lowe, E.D, Campbell, I.D, Noble, M.E.M, Hoellerer, M.K.
Deposit date:2008-07-31
Release date:2008-10-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Analysis of the Interactions between Paxillin Ld Motifs and Alpha-Parvin
Structure, 16, 2008
7BJI
DownloadVisualize
BU of 7bji by Molmil
Crystal structure of the Danio rerio centrosomal protein Cep135 coiled-coil fragment 64-190
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Centrosomal protein of 135 kDa, ...
Authors:Li, Q, Hatzopoulos, G, Iller, O, Vakonakis, I.
Deposit date:2021-01-14
Release date:2021-01-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of the Danio rerio centrosomal protein Cep135 coiled-coil fragment 64-190
To Be Published
5J4O
DownloadVisualize
BU of 5j4o by Molmil
Structure of human erythrocytic Spectrin alpha chain repeats 16-17
Descriptor: 1,2-ETHANEDIOL, Spectrin alpha chain, erythrocytic 1, ...
Authors:Cutts, E.E, Vakonakis, I.
Deposit date:2016-04-01
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Interactions of Plasmodium falciparum KAHRP and PfEMP1 with the host cytoskeleton suggest a model for cytoadherent protrusions on the infected erythrocyte surface
To Be Published
6SSZ
DownloadVisualize
BU of 6ssz by Molmil
Structure of the Plasmodium falciparum falcipain 2 protease in complex with an (E)-chalcone inhibitor.
Descriptor: (~{E})-3-(1,3-benzodioxol-5-yl)-1-(3-nitrophenyl)prop-2-en-1-one, Cysteine proteinase falcipain 2a
Authors:Machin, J, Kantsadi, A, Vakonakis, I.
Deposit date:2019-09-09
Release date:2019-12-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:The complex of Plasmodium falciparum falcipain-2 protease with an (E)-chalcone-based inhibitor highlights a novel, small, molecule-binding site.
Malar.J., 18, 2019
3MQL
DownloadVisualize
BU of 3mql by Molmil
Crystal structure of the fibronectin 6FnI1-2FnII7FnI fragment
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Erat, M.C, Campbell, I.D, Vakonakis, I.
Deposit date:2010-04-28
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Implications for collagen binding from the crystallographic structure of fibronectin 6FnI1-2FnII7FnI
J.Biol.Chem., 285, 2010
3Q0X
DownloadVisualize
BU of 3q0x by Molmil
N-terminal coiled-coil dimer domain of C. reinhardtii SAS-6 homolog Bld12p
Descriptor: Centriole protein
Authors:Kitagawa, D, Vakonakis, I, Olieric, N, Hilbert, M, Keller, D, Olieric, V, Bortfeld, M, Erat, M.C, Flueckiger, I, Goenczy, P, Steinmetz, M.O.
Deposit date:2010-12-16
Release date:2011-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Structural basis of the 9-fold symmetry of centrioles.
Cell(Cambridge,Mass.), 144, 2011
3Q0Y
DownloadVisualize
BU of 3q0y by Molmil
N-terminal domain of C. reinhardtii SAS-6 homolog Bld12p
Descriptor: Centriole protein
Authors:Kitagawa, D, Vakonakis, I, Olieric, N, Hilbert, M, Keller, D, Olieric, V, Bortfeld, M, Erat, M.C, Flueckiger, I, Goenczy, P, Steinmetz, M.O.
Deposit date:2010-12-16
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of the 9-fold symmetry of centrioles.
Cell(Cambridge,Mass.), 144, 2011

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon