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6AK3
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BU of 6ak3 by Molmil
Crystal structure of the human prostaglandin E receptor EP3 bound to prostaglandin E2
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid, Prostaglandin E2 receptor EP3 subtype,Soluble cytochrome b562
Authors:Morimoto, K, Suno, R, Iwata, S, Kobayashi, T.
Deposit date:2018-08-29
Release date:2018-12-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the endogenous agonist-bound prostanoid receptor EP3.
Nat. Chem. Biol., 15, 2019
1X0G
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BU of 1x0g by Molmil
Crystal Structure of IscA with the [2Fe-2S] cluster
Descriptor: FE2/S2 (INORGANIC) CLUSTER, IscA, SODIUM ION
Authors:Morimoto, K, Yamashita, E, Kondou, Y, Lee, S.J, Tsukihara, T, Nakai, M.
Deposit date:2005-03-22
Release date:2006-06-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Asymmetric IscA Homodimer with an Exposed [2Fe-2S] Cluster Suggests the Structural Basis of the Fe-S Cluster Biosynthetic Scaffold.
J.Mol.Biol., 360, 2006
1ENK
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BU of 1enk by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENI
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BU of 1eni by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENJ
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BU of 1enj by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
2END
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BU of 2end by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
3MOO
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BU of 3moo by Molmil
Crystal structure of the HmuO, heme oxygenase from Corynebacterium diphtheriae, in complex with azide-bound verdoheme
Descriptor: 5-OXA-PROTOPORPHYRIN IX CONTAINING FE, AZIDE ION, Heme oxygenase, ...
Authors:Omori, K, Matsui, T, Unno, M, Ikeda-Saito, M.
Deposit date:2010-04-22
Release date:2011-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Enzymatic ring-opening mechanism of verdoheme by the heme oxygenase: a combined X-ray crystallography and QM/MM study.
J.Am.Chem.Soc., 132, 2010
3SMV
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BU of 3smv by Molmil
X-ray Crystal Structure of L-Azetidine-2-Carboxylate Hydrolase
Descriptor: (S)-2-haloacid dehalogenase, GLYCEROL, IMIDAZOLE
Authors:Toyoda, M, Mikami, B, Jitsumori, K, Wackett, L.P, Esaki, N, Kurihara, T.
Deposit date:2011-06-28
Release date:2012-07-18
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal structure of L-Azetidine-2-carboxylate hydrolase from Pseudomonas sp. strain A2C
To be Published
2D0P
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BU of 2d0p by Molmil
Structure of diol dehydratase-reactivating factor in nucleotide free form
Descriptor: CALCIUM ION, SULFATE ION, diol dehydratase-reactivating factor large subunit, ...
Authors:Shibata, N, Mori, K, Hieda, N, Higuchi, Y, Yamanishi, M, Toraya, T.
Deposit date:2005-08-05
Release date:2006-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor
Structure, 13, 2005
2D0O
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BU of 2d0o by Molmil
Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
Authors:Shibata, N, Mori, K, Hieda, N, Higuchi, Y, Yamanishi, M, Toraya, T.
Deposit date:2005-08-05
Release date:2006-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor
Structure, 13, 2005
1T87
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BU of 1t87 by Molmil
Crystal Structure of the Ferrous CO-bound Cytochrome P450cam (C334A)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CAMPHOR, CARBON MONOXIDE, ...
Authors:Nagano, S, Tosha, T, Ishimori, K, Morishima, I, Poulos, T.L.
Deposit date:2004-05-11
Release date:2004-05-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the cytochrome p450cam mutant that exhibits the same spectral perturbations induced by putidaredoxin binding.
J.Biol.Chem., 279, 2004
1CW0
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BU of 1cw0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE IN COMPLEX WITH A DUPLEX DNA
Descriptor: DNA (5'-D(*AP*CP*GP*TP*AP*CP*CP*TP*GP*GP*CP*T)-3'), DNA (5'-D(*AP*GP*C)-3'), DNA (5'-D(P*TP*AP*GP*GP*TP*AP*CP*GP*T)-3'), ...
Authors:Tsutakawa, S.E, Jingami, H, Morikawa, K.
Deposit date:1999-08-25
Release date:1999-12-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex.
Cell(Cambridge,Mass.), 99, 1999
1EQ4
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BU of 1eq4 by Molmil
CRYSTAL STRUCTURES OF SALT BRIDGE MUTANTS OF HUMAN LYSOZYME
Descriptor: LYSOZYME, SODIUM ION
Authors:Takano, K, Tsuchimori, K, Yamagata, Y, Yutani, K.
Deposit date:2000-04-03
Release date:2000-04-19
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of salt bridges near the surface of a protein to the conformational stability.
Biochemistry, 39, 2000
1EQ5
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BU of 1eq5 by Molmil
CRYSTAL STRUCTURES OF SALT BRIDGE MUTANTS OF HUMAN LYSOZYME
Descriptor: LYSOZYME, SODIUM ION
Authors:Takano, K, Tsuchimori, K, Yamagata, Y, Yutani, K.
Deposit date:2000-04-03
Release date:2000-04-19
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of salt bridges near the surface of a protein to the conformational stability.
Biochemistry, 39, 2000
1EQE
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BU of 1eqe by Molmil
CRYSTAL STRUCTURES OF SALT BRIDGE MUTANTS OF HUMAN LYSOZYME
Descriptor: LYSOZYME, SODIUM ION
Authors:Takano, K, Tsuchimori, K, Yamagata, Y, Yutani, K.
Deposit date:2000-04-04
Release date:2000-04-19
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of salt bridges near the surface of a protein to the conformational stability.
Biochemistry, 39, 2000
1ECR
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BU of 1ecr by Molmil
ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA
Descriptor: DNA (5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3, DNA (5'-D(*TP*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3, PROTEIN (REPLICATION-TERMINATOR PROTEIN)
Authors:Kamada, K, Morikawa, K.
Deposit date:1996-09-01
Release date:1997-09-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a replication-terminator protein complexed with DNA.
Nature, 383, 1996
1DQ3
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BU of 1dq3 by Molmil
CRYSTAL STRUCTURE OF AN ARCHAEAL INTEIN-ENCODED HOMING ENDONUCLEASE PI-PFUI
Descriptor: ENDONUCLEASE, ZINC ION
Authors:Ichiyanagi, K, Ishino, Y, Morikawa, K.
Deposit date:1999-12-30
Release date:2000-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an archaeal intein-encoded homing endonuclease PI-PfuI.
J.Mol.Biol., 300, 2000
1LAV
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BU of 1lav by Molmil
STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
Descriptor: RIBONUCLEASE H
Authors:Ishikawa, K, Nakamura, H, Morikawa, K, Kanaya, S.
Deposit date:1993-05-10
Release date:1993-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
Biochemistry, 32, 1993
1KVA
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BU of 1kva by Molmil
E. COLI RIBONUCLEASE HI D134A MUTANT
Descriptor: RIBONUCLEASE H
Authors:Kashiwagi, T, Jeanteur, D, Haruki, M, Katayanagi, K, Kanaya, S, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVC
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BU of 1kvc by Molmil
E. COLI RIBONUCLEASE HI D134N MUTANT
Descriptor: RIBONUCLEASE H
Authors:Kashiwagi, T, Jeanteur, D, Haruki, M, Katayanagi, K, Kanaya, S, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVB
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BU of 1kvb by Molmil
E. COLI RIBONUCLEASE HI D134H MUTANT
Descriptor: RIBONUCLEASE H
Authors:Kashiwagi, T, Jeanteur, D, Haruki, M, Katayanagi, K, Kanaya, S, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1LAW
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BU of 1law by Molmil
STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
Descriptor: RIBONUCLEASE H
Authors:Ishikawa, K, Nakamura, H, Morikawa, K, Kanaya, S.
Deposit date:1993-05-10
Release date:1993-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
Biochemistry, 32, 1993
1CH4
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BU of 1ch4 by Molmil
MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V)
Descriptor: CARBON MONOXIDE, MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE
Authors:Shirai, T, Fujikake, M, Yamane, T, Inaba, K, Ishimori, K, Morishima, I.
Deposit date:1998-06-11
Release date:1999-04-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
1ETU
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BU of 1etu by Molmil
STRUCTURAL DETAILS OF THE BINDING OF GUANOSINE DIPHOSPHATE TO ELONGATION FACTOR TU FROM E. COLI AS STUDIED BY X-RAY CRYSTALLOGRAPHY
Descriptor: ELONGATION FACTOR TU, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Clark, B.F.C, Lacour, T.F.M, Kjeldgaard, M, Morikawa, K, Nyborg, J, Rubin, R, Thirup, S.
Deposit date:1988-01-15
Release date:1988-07-16
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural details of the binding of guanosine diphosphate to elongation factor Tu from E. coli as studied by X-ray crystallography.
EMBO J., 4, 1985
3M0M
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BU of 3m0m by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with D-allose
Descriptor: D-ALLOSE, L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
Deposit date:2010-03-03
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010

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