4YOY
 
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4YOT
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4YOX
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5WVU
 | | Crystal structure of carboxypeptidase from Thermus thermophilus | | Descriptor: | GLYCEROL, Thermostable carboxypeptidase 1, ZINC ION | | Authors: | Okai, M, Nagata, K, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2016-12-29 | | Release date: | 2017-02-22 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Insight into the transition between the open and closed conformations of Thermus thermophilus carboxypeptidase.
Biochem. Biophys. Res. Commun., 484, 2017
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5ZOJ
 | | Crystal structure of human SMAD2-MAN1 complex | | Descriptor: | Inner nuclear membrane protein Man1, Mothers against decapentaplegic homolog 2 | | Authors: | Miyazono, K, Ohno, Y, Ito, T, Tanokura, M. | | Deposit date: | 2018-04-13 | | Release date: | 2018-10-10 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.794 Å) | | Cite: | Structural basis for receptor-regulated SMAD recognition by MAN1
Nucleic Acids Res., 46, 2018
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5XOC
 | | Crystal structure of human Smad3-FoxH1 complex | | Descriptor: | Mothers against decapentaplegic homolog 3, Thioredoxin 1,Forkhead box protein H1 | | Authors: | Miyazono, K, Ito, T, Tanokura, M. | | Deposit date: | 2017-05-27 | | Release date: | 2018-03-28 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
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5ZOK
 | | Crystal structure of human SMAD1-MAN1 complex. | | Descriptor: | Inner nuclear membrane protein Man1, Mothers against decapentaplegic homolog 1 | | Authors: | Miyazono, K, Ito, T, Tanokura, M. | | Deposit date: | 2018-04-13 | | Release date: | 2018-10-17 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.85 Å) | | Cite: | Structural basis for receptor-regulated SMAD recognition by MAN1
Nucleic Acids Res., 46, 2018
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1V3Z
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1V5Y
 | | Binding of coumarins to NAD(P)H:FMN oxidoreductase | | Descriptor: | 4-HYDROXY-2H-CHROMEN-2-ONE, FLAVIN MONONUCLEOTIDE, Major NAD(P)H-flavin oxidoreductase | | Authors: | Kobori, T, Koike, H, Sasaki, H, Zenno, S, Saigo, K, Tanokura, M. | | Deposit date: | 2003-11-26 | | Release date: | 2005-03-08 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published
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4HE7
 | | Crystal Structure of Brazzein | | Descriptor: | Defensin-like protein, SODIUM ION | | Authors: | Nagata, K, Hongo, N, Kameda, Y, Yamamura, A, Sasaki, H, Lee, W.C, Ishikawa, K, Suzuki, E, Tanokura, M. | | Deposit date: | 2012-10-03 | | Release date: | 2013-03-27 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana
Acta Crystallogr.,Sect.D, 69, 2013
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1V46
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1V5Z
 | | Binding of coumarins to NAD(P)H:FMN oxidoreductase | | Descriptor: | (2E)-3-(2-HYDROXYPHENYL)ACRYLIC ACID, FLAVIN MONONUCLEOTIDE, Major NAD(P)H-flavin oxidoreductase | | Authors: | Kobori, T, Koike, H, Sasaki, H, Zenno, S, Saigo, K, Tanokura, M. | | Deposit date: | 2003-11-26 | | Release date: | 2005-03-08 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published
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5XOD
 | | Crystal structure of human Smad2-Ski complex | | Descriptor: | Mothers against decapentaplegic homolog 2, Ski oncogene | | Authors: | Miyazono, K, Moriwaki, S, Ito, T, Tanokura, M. | | Deposit date: | 2017-05-27 | | Release date: | 2018-03-28 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.851 Å) | | Cite: | Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
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1VDJ
 | | Solution structure of actin-binding domain of troponin in Ca2+-bound state | | Descriptor: | Troponin I, fast skeletal muscle | | Authors: | Murakami, K, Yumoto, F, Ohki, S, Yasunaga, T, Tanokura, M, Wakabayashi, T. | | Deposit date: | 2004-03-22 | | Release date: | 2005-09-06 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
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1VDI
 | | Solution structure of actin-binding domain of troponin in Ca2+-free state | | Descriptor: | Troponin I, fast skeletal muscle | | Authors: | Murakami, K, Yumoto, F, Ohki, S, Yasunaga, T, Tanokura, M, Wakabayashi, T. | | Deposit date: | 2004-03-22 | | Release date: | 2005-09-06 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
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2D37
 | | The Crystal Structure of Flavin Reductase HpaC complexed with NAD+ | | Descriptor: | FLAVIN MONONUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, hypothetical NADH-dependent FMN oxidoreductase | | Authors: | Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M. | | Deposit date: | 2005-09-26 | | Release date: | 2006-05-30 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
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2D36
 | | The Crystal Structure of Flavin Reductase HpaC | | Descriptor: | FLAVIN MONONUCLEOTIDE, hypothetical NADH-dependent FMN oxidoreductase | | Authors: | Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M. | | Deposit date: | 2005-09-26 | | Release date: | 2006-05-30 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
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2D38
 | | The Crystal Structure of Flavin Reductase HpaC complexed with NADP+ | | Descriptor: | FLAVIN MONONUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, hypothetical NADH-dependent FMN oxidoreductase | | Authors: | Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M. | | Deposit date: | 2005-09-26 | | Release date: | 2006-05-30 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
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2DVY
 | | Crystal structure of restriction endonucleases PabI | | Descriptor: | Restriction endonuclease PabI | | Authors: | Miyazono, K, Watanabe, M, Kamo, M, Sawasaki, T, Nagata, K, Endo, Y, Tanokura, M, Kobayashi, I. | | Deposit date: | 2006-08-01 | | Release date: | 2007-05-08 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
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3WGB
 | | Crystal structure of aeromonas jandaei L-allo-threonine aldolase | | Descriptor: | GLYCINE, L-allo-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] | | Authors: | Qin, H.M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Ohtsuka, J, Hou, F, Nagata, K, Shimizu, S, Tanokura, M. | | Deposit date: | 2013-08-03 | | Release date: | 2014-07-09 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity.
Acta Crystallogr.,Sect.D, 70, 2014
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3WGC
 | | Aeromonas jandaei L-allo-threonine aldolase H128Y/S292R double mutant | | Descriptor: | L-allo-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] | | Authors: | Qin, H.M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Ohtsuka, J, Hou, F, Nagata, K, Shimizu, S, Tanokura, M. | | Deposit date: | 2013-08-03 | | Release date: | 2014-07-09 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity.
Acta Crystallogr.,Sect.D, 70, 2014
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3WLX
 | | Crystal structure of low-specificity L-threonine aldolase from Escherichia coli | | Descriptor: | Low specificity L-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] | | Authors: | Qin, H.-M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Hou, F, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M. | | Deposit date: | 2013-11-15 | | Release date: | 2014-12-17 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.51 Å) | | Cite: | Structure analysis of L-threonine aldolase from Escherichia coli unravels the low-specificity and thermostability
To be Published
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2D7J
 | | Crystal Structure Analysis of Glutamine Amidotransferase from Pyrococcus horikoshii OT3 | | Descriptor: | GMP synthase [glutamine-hydrolyzing] subunit A | | Authors: | Maruoka, S, Lee, W.C, Kamo, M, Kudo, N, Nagata, K, Tanokura, M. | | Deposit date: | 2005-11-21 | | Release date: | 2006-11-21 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.89 Å) | | Cite: | Crystal structure of glutamine amidotransferase from Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 81, 2005
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3WI7
 | | Crystal Structure of the Novel Haloalkane Dehalogenase DatA from Agrobacterium tumefaciens C58 | | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Haloalkane dehalogenase | | Authors: | Guan, L.J, Yabuki, H, Okai, M, Ohtsuka, J, Tanokura, M. | | Deposit date: | 2013-09-06 | | Release date: | 2014-07-23 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystal structure of the novel haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58 reveals a special halide-stabilizing pair and enantioselectivity mechanism.
Appl.Microbiol.Biotechnol., 98, 2014
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3WG6
 | | Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH | | Descriptor: | Conjugated polyketone reductase C1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | Authors: | Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M. | | Deposit date: | 2013-07-28 | | Release date: | 2013-08-21 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH.
Proteins, 81, 2013
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