8JH0
| Crystal structure of the light-driven sodium pump IaNaR | Descriptor: | RETINAL, Xanthorhodopsin | Authors: | Hashimoto, T, Kato, K, Tanaka, Y, Yao, M, Kikukawa, T. | Deposit date: | 2023-05-22 | Release date: | 2023-11-01 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Multistep conformational changes leading to the gate opening of light-driven sodium pump rhodopsin. J.Biol.Chem., 299, 2023
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5AYE
| Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate and beta-(1,4)-mannobiose | Descriptor: | Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION, beta-D-mannopyranose-(1-4)-beta-D-mannopyranose | Authors: | Ye, Y, Saburi, W, Kato, K, Yao, M. | Deposit date: | 2015-08-13 | Release date: | 2016-03-23 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies. Febs Lett., 590, 2016
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5AYD
| Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate | Descriptor: | Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION | Authors: | Ye, Y, Saburi, W, Kato, K, Yao, M. | Deposit date: | 2015-08-13 | Release date: | 2016-03-23 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies. Febs Lett., 590, 2016
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5AYC
| Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose | Descriptor: | 4-O-beta-D-mannosyl-D-glucose phosphorylase, SULFATE ION, beta-D-mannopyranose-(1-4)-beta-D-glucopyranose | Authors: | Ye, Y, Saburi, W, Kato, K, Yao, M. | Deposit date: | 2015-08-13 | Release date: | 2016-03-23 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies. Febs Lett., 590, 2016
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5AY9
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2JZ4
| Putative 32 kDa myrosinase binding protein At3g16450.1 from Arabidopsis thaliana | Descriptor: | Jasmonate inducible protein isolog | Authors: | Takeda, N, Sugimori, N, Torizawa, T, Terauchi, T, Ono, A.M, Yagi, H, Yamaguchi, Y, Kato, K, Ikeya, T, Guntert, P, Aceti, D.J, Markley, J.L, Kainosho, M, Center for Eukaryotic Structural Genomics (CESG) | Deposit date: | 2007-12-28 | Release date: | 2008-02-19 | Last modified: | 2024-05-08 | Method: | SOLUTION NMR | Cite: | Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR. Febs J., 275, 2008
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5H18
| Crystal structure of catalytic domain of UGGT (UDP-glucose-bound form) from Thermomyces dupontii | Descriptor: | CALCIUM ION, GLYCEROL, UGGT, ... | Authors: | Satoh, T, Zhu, T, Toshimori, T, Kamikubo, H, Uchihashi, T, Kato, K. | Deposit date: | 2016-10-08 | Release date: | 2017-09-27 | Last modified: | 2017-11-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep, 7, 2017
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5Y7F
| Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, UGGT, ... | Authors: | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | Deposit date: | 2017-08-17 | Release date: | 2017-09-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep, 7, 2017
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5Y7O
| Crystal structure of folding sensor region of UGGT from Thermomyces dupontii | Descriptor: | UGGT | Authors: | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | Deposit date: | 2017-08-17 | Release date: | 2017-09-27 | Last modified: | 2017-11-01 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep, 7, 2017
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5DKZ
| Crystal structure of glucosidase II alpha subunit (alpha3-Glc2-bound from) | Descriptor: | Alpha glucosidase-like protein, alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose | Authors: | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | Deposit date: | 2015-09-04 | Release date: | 2016-01-27 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control. Sci Rep, 6, 2016
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5DKX
| Crystal structure of glucosidase II alpha subunit (Tris-bound from) | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha glucosidase-like protein, CHLORIDE ION | Authors: | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | Deposit date: | 2015-09-04 | Release date: | 2016-01-27 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control. Sci Rep, 6, 2016
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1IYF
| Solution structure of ubiquitin-like domain of human parkin | Descriptor: | parkin | Authors: | Sakata, E, Yamaguchi, Y, Kurimoto, E, Kikuchi, J, Yokoyama, S, Kawahara, H, Yokosawa, H, Hattori, N, Mizuno, Y, Tanaka, K, Kato, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2002-08-13 | Release date: | 2003-03-25 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain EMBO REP., 4, 2003
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5DL0
| Crystal structure of glucosidase II alpha subunit (Glc1Man2-bound from) | Descriptor: | Alpha glucosidase-like protein, alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose | Authors: | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | Deposit date: | 2015-09-04 | Release date: | 2016-01-27 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control. Sci Rep, 6, 2016
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5CRW
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5DKY
| Crystal structure of glucosidase II alpha subunit (DNJ-bound from) | Descriptor: | 1-DEOXYNOJIRIMYCIN, Alpha glucosidase-like protein | Authors: | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | Deposit date: | 2015-09-04 | Release date: | 2016-01-27 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control. Sci Rep, 6, 2016
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6JPT
| Crystal structure of human PAC3 homodimer (trigonal form) | Descriptor: | POTASSIUM ION, Proteasome assembly chaperone 3, THIOCYANATE ION | Authors: | Satoh, T, Yagi-Utsumi, M, Okamoto, K, Kurimoto, E, Tanaka, K, Kato, K. | Deposit date: | 2019-03-27 | Release date: | 2019-05-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (0.96 Å) | Cite: | Molecular and Structural Basis of the Proteasome alpha Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer. Int J Mol Sci, 20, 2019
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8IN4
| Eisenia hydrolysis-enhancing protein from Aplysia kurodai | Descriptor: | 25 kDa polyphenol-binding protein, ACETYL GROUP, GLYCEROL | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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8IN1
| beta-glucosidase protein from Aplysia kurodai | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-Glucosidase, alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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8IN6
| Eisenia hydrolysis-enhancing protein from Aplysia kurodai complex with tannic acid | Descriptor: | 25 kDa polyphenol-binding protein, BETA-1,2,3,4,6-PENTA-O-GALLOYL-D-GLUCOPYRANOSE | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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8IN3
| Eisenia hydrolysis-enhancing protein from Aplysia kurodai | Descriptor: | 25 kDa polyphenol-binding protein, GLYCEROL | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.15 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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7Y8Q
| Amyloid-beta assemblage on GM1-containing membranes | Descriptor: | Amyloid-beta protein 40 | Authors: | Yagi-Utsumi, M, Itoh, S.G, Okumura, H, Yanagisawa, K, Kato, K, Nishimura, K. | Deposit date: | 2022-06-24 | Release date: | 2023-07-05 | Last modified: | 2024-05-15 | Method: | SOLID-STATE NMR | Cite: | The Double-Layered Structure of Amyloid-beta Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization. Acs Chem Neurosci, 14, 2023
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4YHD
| Staphylococcal alpha-hemolysin H35A mutant monomer | Descriptor: | Alpha-hemolysin, CHLORIDE ION | Authors: | Sugawara, T, Kato, K, Tanaka, Y, Yao, M. | Deposit date: | 2015-02-27 | Release date: | 2015-10-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.801 Å) | Cite: | Structural basis for pore-forming mechanism of staphylococcal alpha-hemolysin Toxicon, 108, 2015
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5AXM
| Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) | Descriptor: | MAGNESIUM ION, RNA (75-MER), tRNA(His)-5'-guanylyltransferase (Thg1) like protein | Authors: | Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M. | Deposit date: | 2015-07-31 | Release date: | 2016-08-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein Sci Adv, 2, 2016
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5AXL
| Crystal structure of Thg1 like protein (TLP) with GTP | Descriptor: | GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tRNA(His)-5'-guanylyltransferase (Thg1) like protein | Authors: | Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M. | Deposit date: | 2015-07-31 | Release date: | 2016-08-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.998 Å) | Cite: | Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein Sci Adv, 2, 2016
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5AXK
| Crystal structure of Thg1 like protein (TLP) | Descriptor: | GLYCEROL, tRNA(His)-5'-guanylyltransferase (Thg1) like protein | Authors: | Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M. | Deposit date: | 2015-07-31 | Release date: | 2016-08-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein Sci Adv, 2, 2016
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