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6ZBS
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BU of 6zbs by Molmil
Beta ODAP Synthetase (BOS)
Descriptor: Beta ODAP Synthetase (BOS), DI(HYDROXYETHYL)ETHER, MAGNESIUM ION
Authors:Dym, O.
Deposit date:2020-06-09
Release date:2022-01-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin beta-ODAP in grass pea.
J.Biol.Chem., 298, 2022
4U4M
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BU of 4u4m by Molmil
Crystal structure of 0.5M urea unfolded YagE, a KDG aldolase protein in complex with Pyruvate
Descriptor: 1,2-ETHANEDIOL, PYRUVIC ACID, UREA, ...
Authors:Manoj Kumar, P, Bhaskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-07-24
Release date:2015-07-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Crystal structure of 0.5M urea unfolded YagE, a KDG aldolase protein in complex with Pyruvate
To be published
1S0W
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BU of 1s0w by Molmil
1b Lactamse/ b Lactamase Inhibitor
Descriptor: Beta-lactamase inhibitory protein, CALCIUM ION, beta-lactamase TEM
Authors:Schreiber, G, Reichman, D, Israel Structural Proteomics Center (ISPC)
Deposit date:2004-01-05
Release date:2004-02-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The modular architecture of protein-protein binding interfaces.
Proc.Natl.Acad.Sci.USA, 102, 2005
3GKL
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BU of 3gkl by Molmil
Following evolutionary paths to high affinity and selectivity protein-protein interactions using Colicin7 and Immunity proteins
Descriptor: Colicin-E7, Colicin-E9 immunity protein, ZINC ION
Authors:Dym, O, Tawfik, D.S, Israel Structural Proteomics Center (ISPC)
Deposit date:2009-03-11
Release date:2009-09-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Following evolutionary paths to high affinity and selectivity protein-protein interactions
To be Published
3GJN
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BU of 3gjn by Molmil
Following evolutionary paths to high affinity and selectivity protein-protein interactions using Colicin7 and Immunity proteins
Descriptor: Colicin-E7, Colicin-E9 immunity protein, ZINC ION
Authors:Dym, O, Tawfik, D.S.
Deposit date:2009-03-09
Release date:2009-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Following evolutionary paths to protein-protein interactions with high affinity and selectivity
Nat.Struct.Mol.Biol., 16, 2009
5Z1D
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BU of 5z1d by Molmil
MAP2K7 C276S mutant-inhibitor
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Dual specificity mitogen-activated protein kinase kinase 7, N-[3-(6-methyl-1H-indazol-3-yl)phenyl]prop-2-enamide
Authors:Kinoshita, T, London, N.
Deposit date:2017-12-26
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Covalent Docking Identifies a Potent and Selective MKK7 Inhibitor.
Cell Chem Biol, 26, 2019
5Z1E
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BU of 5z1e by Molmil
MAP2K7 C218S mutant-inhibitor
Descriptor: Dual specificity mitogen-activated protein kinase kinase 7, N-[3-(6-methyl-1H-indazol-3-yl)phenyl]prop-2-enamide
Authors:Kinoshita, T, London, N.
Deposit date:2017-12-26
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Covalent Docking Identifies a Potent and Selective MKK7 Inhibitor.
Cell Chem Biol, 26, 2019
6HAP
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BU of 6hap by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6HAM
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BU of 6ham by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6YBH
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BU of 6ybh by Molmil
Deoxyribonucleoside Kinase
Descriptor: Deoxynucleoside kinase, GLYCEROL, Pyrrolo-dC, ...
Authors:Allouche-Arnon, H, Bar-Shir, A, Dym, O.
Deposit date:2020-03-17
Release date:2021-03-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Computationally designed dual-color MRI reporters for noninvasive imaging of transgene expression.
Nat.Biotechnol., 40, 2022
5NB5
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BU of 5nb5 by Molmil
Principles for computational design of antibodies
Descriptor: design of antibodies
Authors:Dym, O, Fleishman, S.J.
Deposit date:2017-03-01
Release date:2017-09-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Principles for computational design of binding antibodies.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NBI
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BU of 5nbi by Molmil
Principles for computational design of antibodies
Descriptor: Design of antibodies
Authors:Dym, O, Fleishman, S.J.
Deposit date:2017-03-02
Release date:2017-09-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Principles for computational design of binding antibodies.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4OE7
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BU of 4oe7 by Molmil
Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
Descriptor: (4R)-4-hydroxy-2,5-dioxopentanoic acid, (4S)-4-hydroxy-2,5-dioxopentanoic acid, 1,2-ETHANEDIOL, ...
Authors:Manoj Kumar, P, Baskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-01-12
Release date:2014-12-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
To be Published
4ONV
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BU of 4onv by Molmil
Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
Descriptor: 1,2-ETHANEDIOL, 2-KETO-3-DEOXYGLUCONATE, GLYCEROL, ...
Authors:Manoj Kumar, P, Bhaskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-01-29
Release date:2015-01-14
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
To be Published
3D3M
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BU of 3d3m by Molmil
The Crystal Structure of the C-terminal region of Death Associated Protein 5(DAP5)
Descriptor: Eukaryotic translation initiation factor 4 gamma 2
Authors:Dym, O, Israel Structural Proteomics Center (ISPC)
Deposit date:2008-05-12
Release date:2008-10-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the C-terminal DAP5/p97 domain sheds light on the molecular basis for its processing by caspase cleavage.
J.Mol.Biol., 383, 2008
3IIV
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BU of 3iiv by Molmil
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
Descriptor: KE7 KE7_R7_1/3H, MAGNESIUM ION
Authors:Khersonsky, O, Dym, O, Tawfik, D.S.
Deposit date:2009-08-03
Release date:2010-03-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evolutionary Optimization of Computationally Designed Enzymes: Kemp Eliminases of the KE07 Series.
J.Mol.Biol., 396, 2010
3IIO
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BU of 3iio by Molmil
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
Descriptor: KE07
Authors:Khersonsky, O, Dym, O, Tawfik, D.S.
Deposit date:2009-08-03
Release date:2010-03-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Evolutionary Optimization of Computationally Designed Enzymes: Kemp Eliminases of the KE07 Series.
J.Mol.Biol., 396, 2010
3IIP
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BU of 3iip by Molmil
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
Descriptor: KE7 R6 3/7F, POLYETHYLENE GLYCOL (N=34)
Authors:Khersonsky, O, Dym, O, Tawfik, D.S.
Deposit date:2009-08-03
Release date:2010-03-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Evolutionary Optimization of Computationally Designed Enzymes: Kemp Eliminases of the KE07 Series.
J.Mol.Biol., 396, 2010
3JXV
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BU of 3jxv by Molmil
Crystal Structure of the 3 FKBP domains of wheat FKBP73
Descriptor: 70 kDa peptidyl-prolyl isomerase
Authors:Dym, O, Breiman, A, Israel Structural Proteomics Center (ISPC)
Deposit date:2009-09-21
Release date:2010-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain.
J Struct Funct Genomics, 11, 2010
3JYM
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BU of 3jym by Molmil
Crystal Structure of the 3 FKBP domains of wheat FKBP73
Descriptor: FK506-binding protein (FKBP) from wheat
Authors:Dym, O, Breiman, A, Israel Structural Proteomics Center (ISPC)
Deposit date:2009-09-22
Release date:2010-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Crystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain
J.STRUCT.FUNCT.GENOM., 11, 2010
6GJC
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BU of 6gjc by Molmil
Structure of Mycobacterium tuberculosis Fatty Acid Synthase - I
Descriptor: FLAVIN MONONUCLEOTIDE, Fatty acid synthase
Authors:Elad, N, Baron, S, Shakked, Z, Zimhony, O, Diskin, R.
Deposit date:2018-05-16
Release date:2018-09-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of Type-I Mycobacterium tuberculosis fatty acid synthase at 3.3 angstrom resolution.
Nat Commun, 9, 2018
3QA9
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BU of 3qa9 by Molmil
Crystal Structure of Prb (PH1109 protein redesigned for binding)
Descriptor: CoA binding domain protein
Authors:Spiegel, P.C.
Deposit date:2011-01-10
Release date:2011-04-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A de novo protein binding pair by computational design and directed evolution.
Mol.Cell, 42, 2011
2B5R
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BU of 2b5r by Molmil
1B Lactamase / B Lactamase Inhibitor
Descriptor: Beta-lactamase TEM, Beta-lactamase inhibitory protein
Authors:Rahat, O, Albeck, S, Meged, R, Dym, O, Screiber, G, Israel Structural Proteomics Center (ISPC)
Deposit date:2005-09-29
Release date:2006-04-11
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Binding Hot Spots in the TEM1-BLIP Interface in Light of its Modular Architecture.
J.Mol.Biol., 102, 2006
1N6U
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BU of 1n6u by Molmil
NMR structure of the interferon-binding ectodomain of the human interferon receptor
Descriptor: Interferon-alpha/beta receptor beta chain
Authors:Chill, J.H, Quadt, S.R, Levy, R, Schreiber, G, Anglister, J.
Deposit date:2002-11-12
Release date:2003-07-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The human type I interferon receptor. NMR structure reveals the molecular basis of ligand binding.
Structure, 11, 2003
1N6V
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BU of 1n6v by Molmil
Average structure of the interferon-binding ectodomain of the human type I interferon receptor
Descriptor: Interferon-alpha/beta receptor beta chain
Authors:Chill, J.H, Quadt, S.R, Levy, R, Schreiber, G, Anglister, J.
Deposit date:2002-11-12
Release date:2003-07-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The human type I interferon receptor. NMR structure reveals the molecular basis of ligand binding.
Structure, 11, 2003

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