Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1GFO
DownloadVisualize
BU of 1gfo by Molmil
OMPF PORIN (MUTANT R132P)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MATRIX PORIN OUTER MEMBRANE PROTEIN F
Authors:Lou, K.-L, Schirmer, T.
Deposit date:1996-05-08
Release date:1996-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis.
J.Biol.Chem., 271, 1996
1GFN
DownloadVisualize
BU of 1gfn by Molmil
OMPF PORIN DELETION (MUTANT DELTA 109-114)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MATRIX PORIN OUTER MEMBRANE PROTEIN F
Authors:Lou, K.-L, Schirmer, T.
Deposit date:1996-05-08
Release date:1996-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis.
J.Biol.Chem., 271, 1996
4XJY
DownloadVisualize
BU of 4xjy by Molmil
Periplasmic repressor protein YfiR
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, L(+)-TARTARIC ACID, YfiR
Authors:Kauer, S, Schirmer, T.
Deposit date:2015-01-09
Release date:2016-01-20
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Periplasmic repressor protein YfiR at 1.8 Angstroms resolution
To Be Published
3ZP9
DownloadVisualize
BU of 3zp9 by Molmil
Human Carbonic Anhydrase II as a Scaffold for an Artificial Transfer Hydrogenase
Descriptor: CARBONIC ANHYDRASE 2, GLYCEROL, MERCURIBENZOIC ACID, ...
Authors:Heinisch, T, Schirmer, T.
Deposit date:2013-02-27
Release date:2013-10-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Human Carbonic Anhydrase II as Host Protein for the Creation of Artificial Metalloenzymes: The Asymmetric Transfer Hydrogenation of Imines
Chem.Sci., 4, 2013
2JK8
DownloadVisualize
BU of 2jk8 by Molmil
Type IV secretion system effector protein BepA complexed with a pyrophosphate moiety
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Palanivelu, D.V, Schirmer, T.
Deposit date:2008-08-22
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Fic Domain Catalyzed Adenylylation: Insight Provided by the Structural Analysis of the Type Iv Secretion System Effector Bepa.
Protein Sci., 20, 2011
2J88
DownloadVisualize
BU of 2j88 by Molmil
Hyaluronidase in complex with a monoclonal IgG Fab fragment
Descriptor: FAB, HYALURONONGLUCOSAMINIDASE
Authors:Padavattan, S, Schirmer, T, Markovic-Housley, Z.
Deposit date:2006-10-23
Release date:2007-04-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Identification of a B-Cell Epitope of Hyaluronidase, a Major Bee Venom Allergen, from its Crystal Structure in Complex with a Specific Fab.
J.Mol.Biol., 368, 2007
2J1N
DownloadVisualize
BU of 2j1n by Molmil
osmoporin OmpC
Descriptor: CHLORIDE ION, DODECANE, MAGNESIUM ION, ...
Authors:Basle, A, Storici, P, Rummel, G, Rosenbusch, J.P, Schirmer, T.
Deposit date:2006-08-15
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Osmoporin Ompc from E. Coli at 2.0 A.
J.Mol.Biol., 362, 2006
2WPU
DownloadVisualize
BU of 2wpu by Molmil
Chaperoned ruthenium metallodrugs that recognize telomeric DNA
Descriptor: (3AS,4S,6AR)-4-(5-((3R,4R)-3,4-DIAMINOPYRROLIDIN-1-YL)-5-OXOPENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE-P-CYMENE-CHLORO-RUTHENIUM(III), GLYCEROL, STREPTAVIDIN, ...
Authors:Heinisch, T, Schirmer, T, Zimbron, J.M, Sardo, A, Wohlschlager, T, Gradinaru, J, Creus, M, Ward, T.R.
Deposit date:2009-08-10
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Chemo-Genetic Optimization of DNA Recognition by Metallodrugs Using a Presenter-Protein Strategy.
Chemistry, 16, 2010
1BLE
DownloadVisualize
BU of 1ble by Molmil
PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM
Descriptor: FRUCTOSE PERMEASE
Authors:Schauder, S, Schirmer, T.
Deposit date:1997-05-15
Release date:1997-09-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the IIB subunit of a fructose permease (IIBLev) from Bacillus subtilis.
J.Mol.Biol., 276, 1998
4GJV
DownloadVisualize
BU of 4gjv by Molmil
Streptavidin-S112H
Descriptor: CHLORIDE ION, Rhodium, Streptavidin, ...
Authors:Heinisch, T, Schirmer, T.
Deposit date:2012-08-10
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A dual anchoring strategy for the localization and activation of artificial metalloenzymes based on the biotin-streptavidin technology.
J.Am.Chem.Soc., 135, 2013
4GJS
DownloadVisualize
BU of 4gjs by Molmil
Streptavidin-K121H
Descriptor: Rhodium, Streptavidin, trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)
Authors:Heinisch, T, Schirmer, T.
Deposit date:2012-08-10
Release date:2013-02-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A dual anchoring strategy for the localization and activation of artificial metalloenzymes based on the biotin-streptavidin technology.
J.Am.Chem.Soc., 135, 2013
4KIE
DownloadVisualize
BU of 4kie by Molmil
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA
Descriptor: Cyclic di-GMP phosphodiesterase YahA, TRIETHYLENE GLYCOL
Authors:Sundriyal, A, Schirmer, T.
Deposit date:2013-05-02
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP.
J.Biol.Chem., 289, 2014
1K2W
DownloadVisualize
BU of 1k2w by Molmil
Crystal structure of sorbitol dehydrogenase from R. sphaeroides
Descriptor: SORBITOL DEHYDROGENASE
Authors:Philippsen, A, Schirmer, T, Stetefeld, J.
Deposit date:2001-09-29
Release date:2003-11-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of zinc-independent sorbitol dehydrogenase from Rhodobacter sphaeroides at 2.4 A resolution.
Acta Crystallogr.,Sect.D, 61, 2005
3S6A
DownloadVisualize
BU of 3s6a by Molmil
Fic protein from NEISSERIA MENINGITIDIS in complex with AMPPNP
Descriptor: Cell filamentation protein Fic-related protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Stanger, F, Goepfert, A, Schirmer, T.
Deposit date:2011-05-25
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
3SHG
DownloadVisualize
BU of 3shg by Molmil
VBHT Fic protein from BARTONELLA SCHOENBUCHENSIS in complex with VBHA antitoxin
Descriptor: L(+)-TARTARIC ACID, VbhA, VbhT
Authors:Goepfert, A, Schirmer, T.
Deposit date:2011-06-16
Release date:2012-01-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
3S83
DownloadVisualize
BU of 3s83 by Molmil
EAL domain of phosphodiesterase PdeA
Descriptor: GGDEF family protein, POTASSIUM ION
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-05-27
Release date:2011-06-29
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure of EAL domain from Caulobacter crescentus CB15
To be Published
3SN9
DownloadVisualize
BU of 3sn9 by Molmil
Fic protein from NEISSERIA MENINGITIDIS mutant S182A/E186A in complex with AMPPNP
Descriptor: Cell filamentation protein Fic-related protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Goepfert, A, Stanger, F, Schirmer, T.
Deposit date:2011-06-29
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
3T9O
DownloadVisualize
BU of 3t9o by Molmil
Regulatory CZB domain of DgcZ
Descriptor: Diguanylate cyclase DgcZ, ZINC ION
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-08-03
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
3SE5
DownloadVisualize
BU of 3se5 by Molmil
Fic protein from NEISSERIA MENINGITIDIS mutant delta8 in complex with AMPPNP
Descriptor: Cell filamentation protein Fic-related protein, HEXAETHYLENE GLYCOL, MAGNESIUM ION, ...
Authors:Goepfert, A, Stanger, F, Schirmer, T.
Deposit date:2011-06-10
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
3TVK
DownloadVisualize
BU of 3tvk by Molmil
Diguanylate cyclase domain of DgcZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), D(-)-TARTARIC ACID, Diguanylate cyclase DgcZ, ...
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-09-20
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
3U2E
DownloadVisualize
BU of 3u2e by Molmil
EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++
Descriptor: GGDEF family protein, MAGNESIUM ION, RNA (5'-R(P*GP*G)-3')
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-10-03
Release date:2011-10-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:EAL domain from Caulobacter crescentus in complex with 5'-pGpG and Mg++
To be Published
4PGL
DownloadVisualize
BU of 4pgl by Molmil
Crystal structure of engineered D-tagatose 3-epimerase PcDTE-ILS6
Descriptor: D-tagatose 3-epimerase, L-sorbose, L-tagatose, ...
Authors:Hee, C.S, Bosshart, A, Schirmer, T.
Deposit date:2014-05-02
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Directed Divergent Evolution of a Thermostable D-Tagatose Epimerase towards Improved Activity for Two Hexose Substrates.
Chembiochem, 16, 2015
4PRX
DownloadVisualize
BU of 4prx by Molmil
E. coli GyrB 43-kDa N-terminal fragment in complex with ADP+Pi
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, GyrB, ...
Authors:Stanger, F.V, Schirmer, T.
Deposit date:2014-03-06
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the N-Terminal Gyrase B Fragment in Complex with ADPPi Reveals Rigid-Body Motion Induced by ATP Hydrolysis
Plos One, 9, 2014
3ZLM
DownloadVisualize
BU of 3zlm by Molmil
Fic protein from Neisseria meningitidis mutant E186G in complex with AMPPNP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE NMFIC, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Goepfert, A, Schirmer, T.
Deposit date:2013-02-01
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
4R1F
DownloadVisualize
BU of 4r1f by Molmil
Re-refined Human DNA topoisomerase IIa (ATPase and transducer domains) in complex with ADP and SO4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-alpha, GLYCEROL, ...
Authors:Stanger, F.V, Schirmer, T.
Deposit date:2014-08-05
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the N-Terminal Gyrase B Fragment in Complex with ADPPi Reveals Rigid-Body Motion Induced by ATP Hydrolysis
Plos One, 9, 2014

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon