8YTS
| The structure of the cytochrome c546/556 from Thioalkalivibrio paradoxus with unusual UV-Vis spectral features at atomic resolution | Descriptor: | Cytochrome C, HEME C | Authors: | Varfolomeeva, L.A, Solovieva, A.Y, Dergousova, N.I, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2024-03-26 | Release date: | 2024-04-24 | Method: | X-RAY DIFFRACTION (1.15 Å) | Cite: | The structure of the cytochrome c546/556 from Thioalkalivibrio paradoxus with unusual UV-Vis spectral features at atomic resolution To Be Published
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5MWC
| Crystal structure of the genetically-encoded green calcium indicator NTnC in its calcium bound state | Descriptor: | CALCIUM ION, genetically-encoded green calcium indicator NTnC | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Rakitina, T.V, Popov, V.O, Subach, O.M, Barykina, N.V, Subach, F.V. | Deposit date: | 2017-01-18 | Release date: | 2018-02-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Enchanced variant of genetically-encoded green calcium indicator NTnC To Be Published
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8YOU
| The pmTcDH complex structure with an inhibitor SeCN | Descriptor: | COPPER (II) ION, GLYCEROL, SELENIUM ATOM, ... | Authors: | Varfolomeeva, L.A, Polyakov, K.M, Shipkov, N.S, Dergousova, N.I, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2024-03-13 | Release date: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The pmTcDH complex structure with an inhibitor SeCN To Be Published
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5N1T
| Crystal structure of complex between flavocytochrome c and copper chaperone CopC from T. paradoxus | Descriptor: | COPPER (II) ION, CopC, Cytochrome C, ... | Authors: | Osipov, E.M, Lilina, A.V, Tikhonova, T.V, Tsallagov, S.I, Popov, V.O. | Deposit date: | 2017-02-06 | Release date: | 2018-02-28 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structure of the flavocytochrome c sulfide dehydrogenase associated with the copper-binding protein CopC from the haloalkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio paradoxusARh 1. Acta Crystallogr D Struct Biol, 74, 2018
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8YRU
| Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (apo form) after 15 sec of soaking with phenylhydrazine | Descriptor: | ACETATE ION, Aminotransferase class IV, [6-methyl-5-oxidanyl-4-[(2-phenylhydrazinyl)methyl]pyridin-3-yl]methyl dihydrogen phosphate | Authors: | Matyuta, I.O, Bakunova, A.K, Minyaev, M.E, Popov, V.O, Boyko, K.M. | Deposit date: | 2024-03-21 | Release date: | 2024-04-17 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (apo form) after 15 sec of soaking with phenylhydrazine To Be Published
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8YRT
| Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis in the holo form obtained at pH 7.0 | Descriptor: | Aminotransferase class IV, PYRIDOXAL-5'-PHOSPHATE | Authors: | Matyuta, I.O, Bakunova, A.K, Minyaev, M.E, Popov, V.O, Boyko, K.M. | Deposit date: | 2024-03-21 | Release date: | 2024-04-17 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis in the holo form obtained at pH 7.0 To Be Published
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8YU5
| The structure of non-activated thiocyanate dehydrogenase mutant with the H447Q substitution from Pelomicrobium methylotrophicum (pmTcDH H447Q) | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, COPPER (II) ION, ... | Authors: | Varfolomeeva, L.A, Shipkov, N.S, Dergousova, N.I, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2024-03-26 | Release date: | 2024-04-24 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | The structure of non-activated thiocyanate dehydrogenase mutant with the H447Q substitution from Pelomicrobium methylotrophicum (pmTcDH H447Q) To Be Published
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5OEX
| Complex with iodine ion for thiocyanate dehydrogenase from Thioalkalivibrio paradoxus | Descriptor: | 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, COPPER (II) ION, ... | Authors: | Polyakov, K.M, Tsallagov, S.I, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2017-07-10 | Release date: | 2018-08-01 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Discovery and characterization of a novel copper containing enzyme - THIOCYANATE DEHYDROGENASE. To Be Published
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6ZL7
| CRYSTAL STRUCTURE OF C173S MUTATION IN THE PMGL2 ESTERASE FROM PERMAFROST METAGENOMIC LIBRARY | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, MAGNESIUM ION, PMGL2 | Authors: | Goryaynova, D.A, Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Kryukova, M.V, Petrovskaya, L.E, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O. | Deposit date: | 2020-06-30 | Release date: | 2020-07-08 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | CRYSTAL STRUCTURE OF C173S MUTATION IN THE PMGL2 ESTERASE FROM PERMAFROST METAGENOMIC LIBRARY To Be Published
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6ZHK
| Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from Methanocaldococcus jannaschii DSM 2661 | Descriptor: | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, MAGNESIUM ION | Authors: | Boyko, K.M, Nikolaeva, T.N, Stekhanova, T.N, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O. | Deposit date: | 2020-06-23 | Release date: | 2020-07-01 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Three-Dimensional Structure of Thermostable D-Amino Acid Transaminase from the Archaeon Methanocaldococcus jannaschii DSM 2661 Crystallography Reports, 2021
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7B1X
| Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library | Descriptor: | esterase PMGL3 | Authors: | Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O. | Deposit date: | 2020-11-25 | Release date: | 2021-11-03 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure. Biomolecules, 11, 2021
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7ARZ
| Ternary complex of NAD-dependent formate dehydrogenase from Physcomitrium patens | Descriptor: | AZIDE ION, Formate dehydrogenase, mitochondrial, ... | Authors: | Goryaynova, D.A, Nikolaeva, A.Y, Pometun, A.A, Savin, S.S, Parshin, P.D, Popov, V.O, Tishkov, V.I, Boyko, K.M. | Deposit date: | 2020-10-26 | Release date: | 2021-11-03 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Ternary complex of NAD-dependent formate dehydrogenase from Physcomitrium patens To Be Published
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8PNY
| Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens complexed with phenylhydrazine and in its apo form | Descriptor: | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, [6-methyl-5-oxidanyl-4-[(2-phenylhydrazinyl)methyl]pyridin-3-yl]methyl dihydrogen phosphate | Authors: | Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O. | Deposit date: | 2023-07-03 | Release date: | 2023-10-25 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Expanded Substrate Specificity in D-Amino Acid Transaminases: A Case Study of Transaminase from Blastococcus saxobsidens. Int J Mol Sci, 24, 2023
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8PNW
| Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens in holo form with PLP | Descriptor: | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, CHLORIDE ION, PYRIDOXAL-5'-PHOSPHATE | Authors: | Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O. | Deposit date: | 2023-07-03 | Release date: | 2023-10-25 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Expanded Substrate Specificity in D-Amino Acid Transaminases: A Case Study of Transaminase from Blastococcus saxobsidens. Int J Mol Sci, 24, 2023
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4L3X
| Nitrite complex of TvNiR, first middle dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2013-06-07 | Release date: | 2014-06-11 | Last modified: | 2017-11-15 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens To be Published
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4L3Z
| Nitrite complex of TvNiR, second middle dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2013-06-07 | Release date: | 2014-06-11 | Last modified: | 2017-11-15 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens To be Published
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4L38
| Nitrite complex of TvNiR, low dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2013-06-05 | Release date: | 2014-07-16 | Last modified: | 2017-11-15 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens To be Published
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4L3Y
| Nitrite complex of TvNiR, high dose data set (NO complex) | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2013-06-07 | Release date: | 2014-06-11 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens To be Published
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3N7U
| NAD-dependent formate dehydrogenase from higher-plant Arabidopsis thaliana in complex with NAD and azide | Descriptor: | AZIDE ION, Formate dehydrogenase, GLYCEROL, ... | Authors: | Shabalin, I.G, Polyakov, K.M, Serov, A.E, Skirgello, O.E, Sadykhov, E.G, Dorovatovskiy, P.V, Tishkov, V.I, Popov, V.O. | Deposit date: | 2010-05-27 | Release date: | 2010-06-09 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structures of the apo and holo forms of NAD-dependent formate dehydrogenase from the higher-plant Arabidopsis Thaliana To be Published
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3NAQ
| Apo-form of NAD-dependent formate dehydrogenase from higher-plant Arabidopsis thaliana | Descriptor: | Formate dehydrogenase, SULFATE ION | Authors: | Shabalin, I.G, Polyakov, K.M, Serov, A.E, Skirgello, O.E, Sadykhov, E.G, Dorovatovskiy, P.V, Tishkov, V.I, Popov, V.O. | Deposit date: | 2010-06-02 | Release date: | 2010-07-07 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structures of the apo and holo forms of NAD-dependent formate dehydrogenase from the higher-plant Arabidopsis Thaliana to be published
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6FUC
| Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970 | Descriptor: | Aminoglycoside phosphotransferase | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Alekseeva, M.G, Mavletova, D.A, Zakharevich, N.V, Rudakova, N.N, Danilenko, V.N, Popov, V.O. | Deposit date: | 2018-02-26 | Release date: | 2019-03-20 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (1.17 Å) | Cite: | Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3′′)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970. Arch.Biochem.Biophys., 671, 2019
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6G5M
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6FUX
| Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970 in complex with ADP and streptomycin | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Aminoglycoside phosphotransferase, GLYCEROL, ... | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Alekseeva, M.G, Mavletova, D.A, Zakharevich, N.V, Rudakova, N.N, Danilenko, V.N, Popov, V.O. | Deposit date: | 2018-02-28 | Release date: | 2019-03-20 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3′′)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970. Arch.Biochem.Biophys., 671, 2019
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6G50
| The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus as isolated. | Descriptor: | 1,2-ETHANEDIOL, COPPER (II) ION, SULFATE ION, ... | Authors: | Polyakov, K.M, Tsallagov, S.I, Tikhkonova, T.V, Popov, V.O. | Deposit date: | 2018-03-28 | Release date: | 2019-04-10 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proc.Natl.Acad.Sci.USA, 117, 2020
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6GKR
| Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum in PLP-form (holo-form) | Descriptor: | ACETATE ION, Branched-chain-amino-acid aminotransferase, CHLORIDE ION, ... | Authors: | Boyko, K.M, Bezsudnova, E.Y, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Popov, V.O. | Deposit date: | 2018-05-21 | Release date: | 2018-09-26 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.19 Å) | Cite: | Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum. Biochimie, 158, 2018
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