Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2MW3
DownloadVisualize
BU of 2mw3 by Molmil
Solution NMR structure of the lasso peptide streptomonomicin
Descriptor: Lasso peptide
Authors:Tietz, J.I, Zhu, L, Mitchell, D.A, Metelev, M, Melby, J.O, Blair, P.M, Livnat, I, Severinov, K.
Deposit date:2014-10-24
Release date:2015-01-28
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Structure, bioactivity, and resistance mechanism of streptomonomicin, an unusual lasso Peptide from an understudied halophilic actinomycete.
Chem.Biol., 22, 2015
5K99
DownloadVisualize
BU of 5k99 by Molmil
Crystal structure of microcin immunity protein MccF from Bacillus anthracis in complex with McC
Descriptor: ADENOSINE MONOPHOSPHATE, Microcin C, Microcin C7 self-immunity protein mccF
Authors:Nocek, B, Kulikovsky, A, Severinov, K, Dubiley, S, Joachimiak, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-05-31
Release date:2017-03-22
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of microcin immunity protein MccF from Bacillus anthracis in complex with McC
To Be Published
5NJA
DownloadVisualize
BU of 5nja by Molmil
E. coli Microcin-processing metalloprotease TldD/E with angiotensin analogue bound
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HIS-PRO-PHE, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
5NJF
DownloadVisualize
BU of 5njf by Molmil
E. coli Microcin-processing metalloprotease TldD/E (TldD H262A mutant) with pentapeptide bound
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ALA-ALA-ALA-ALA-ALA, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
5NJB
DownloadVisualize
BU of 5njb by Molmil
E. coli Microcin-processing metalloprotease TldD/E with actinonin bound
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACTINONIN, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
5NJC
DownloadVisualize
BU of 5njc by Molmil
E. coli Microcin-processing metalloprotease TldD/E (TldD E263A mutant) with hexapeptide bound
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Metalloprotease PmbA, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
5NJ5
DownloadVisualize
BU of 5nj5 by Molmil
E. coli Microcin-processing metalloprotease TldD/E with phosphate bound
Descriptor: 1,2-ETHANEDIOL, Metalloprotease PmbA, Metalloprotease TldD, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
5NJ9
DownloadVisualize
BU of 5nj9 by Molmil
E. coli Microcin-processing metalloprotease TldD/E with DRVY angiotensin fragment bound
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ASP-ARG-VAL-TYR, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
6IBG
DownloadVisualize
BU of 6ibg by Molmil
Bacteriophage G20c portal protein crystal structure for construct with intact N-terminus
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Portal protein
Authors:Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
Deposit date:2018-11-30
Release date:2019-01-23
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6I9E
DownloadVisualize
BU of 6i9e by Molmil
Thermophage P23-45 empty expanded capsid
Descriptor: Auxiliary protein, Major head protein
Authors:Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
Deposit date:2018-11-23
Release date:2019-02-06
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6IBC
DownloadVisualize
BU of 6ibc by Molmil
Thermophage P23-45 procapsid
Descriptor: Major head protein
Authors:Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.39 Å)
Cite:Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3WOF
DownloadVisualize
BU of 3wof by Molmil
Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain
Descriptor: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOE
DownloadVisualize
BU of 3woe by Molmil
Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain
Descriptor: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOD
DownloadVisualize
BU of 3wod by Molmil
RNA polymerase-gp39 complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
1SIG
DownloadVisualize
BU of 1sig by Molmil
CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE
Descriptor: RNA POLYMERASE PRIMARY SIGMA FACTOR
Authors:Malhotra, A, Severinova, E, Darst, S.A.
Deposit date:1997-02-18
Release date:1997-05-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase.
Cell(Cambridge,Mass.), 87, 1996
3GJZ
DownloadVisualize
BU of 3gjz by Molmil
Crystal structure of microcin immunity protein MccF from Bacillus anthracis str. Ames
Descriptor: Microcin immunity protein MccF
Authors:Nocek, B, Zhou, M, Kwon, K, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-03-09
Release date:2009-04-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Functional Characterization of Microcin C Resistance Peptidase MccF from Bacillus anthracis.
J.Mol.Biol., 420, 2012
5LGM
DownloadVisualize
BU of 5lgm by Molmil
Gp5.7 mutant L42A
Descriptor: Fusion protein 5.5/5.7
Authors:Liu, B, Matthews, S.
Deposit date:2016-07-07
Release date:2017-08-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Gp5.7 mutant L42A
to be published
2GHO
DownloadVisualize
BU of 2gho by Molmil
Recombinant Thermus aquaticus RNA polymerase for Structural Studies
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta'
Authors:Lamour, V, Darst, S.A.
Deposit date:2006-03-27
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (5 Å)
Cite:Recombinant Thermus aquaticus RNA Polymerase for Structural Studies.
J.Mol.Biol., 359, 2006
6QLC
DownloadVisualize
BU of 6qlc by Molmil
The ssDNA-binding RNA polymerase cofactor Drc from Pseudomonas phage LUZ7
Descriptor: PHOSPHATE ION, ssDNA binding RNA Polymerase cofactor
Authors:De Zitter, E, Boon, M, De Smet, J, Lavigne, R, Van Meervelt, L.
Deposit date:2019-01-31
Release date:2019-10-30
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:'Drc', a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses.
Nucleic Acids Res., 48, 2020
8BB1
DownloadVisualize
BU of 8bb1 by Molmil
T3 SAM lyase in complex with S-adenosylmethionine synthase
Descriptor: CHLORIDE ION, S-Adenosylmethionine lyase, S-adenosylmethionine synthase
Authors:Triguis, S, Selmer, M.
Deposit date:2022-10-12
Release date:2023-08-23
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Phage T3 overcomes the BREX defense through SAM cleavage and inhibition of SAM synthesis by SAM lyase.
Cell Rep, 42, 2023
3BMB
DownloadVisualize
BU of 3bmb by Molmil
Crystal structure of a new RNA polymerase interacting protein
Descriptor: CHLORIDE ION, Regulator of nucleoside diphosphate kinase, SULFATE ION
Authors:Darst, S.A, Lamour, V.
Deposit date:2007-12-12
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein.
J.Mol.Biol., 383, 2008
8UX9
DownloadVisualize
BU of 8ux9 by Molmil
Asymmetric unit of the PARIS Immune Complex at 3.2 Angstrom Resolution
Descriptor: AriA, AriB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Burman, N.B, Henriques, W, Wilkinson, R, Graham, A, Wiedenheft, B.
Deposit date:2023-11-09
Release date:2024-09-18
Last modified:2025-04-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A virally encoded tRNA neutralizes the PARIS antiviral defence system.
Nature, 634, 2024
7Z6F
DownloadVisualize
BU of 7z6f by Molmil
Crystal structure of the substrate-binding protein YejA in complex with peptide fragment
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Beis, K, Qu, F.
Deposit date:2022-03-11
Release date:2023-09-20
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Trojan horse peptide conjugates remodel the activity spectrum of clinical antibiotics.
Proc.Natl.Acad.Sci.USA, 122, 2025
7Z8E
DownloadVisualize
BU of 7z8e by Molmil
Crystal structure of the substrate-binding protein YejA from S. meliloti in complex with peptide fragment
Descriptor: 1,2-ETHANEDIOL, ABC transporter substrate-binding protein, GLY-SER-ASP-VAL-ALA, ...
Authors:Morera, S, Vigouroux, V, Travin, D.Y.
Deposit date:2022-03-17
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Dual-Uptake Mode of the Antibiotic Phazolicin Prevents Resistance Acquisition by Gram-Negative Bacteria.
Mbio, 14, 2023
6OM4
DownloadVisualize
BU of 6om4 by Molmil
The structure of Microcin C7 biosynthetic enzyme MccB in complex with N-formylated MccA
Descriptor: 5'-O-[(S)-amino(hydroxy)phosphoryl]adenosine, MAGNESIUM ION, MccB protein, ...
Authors:Dong, S.-H, Nair, S.K.
Deposit date:2019-04-18
Release date:2019-05-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by theN-formyl of the peptide precursor.
Chem Sci, 10, 2019

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon