Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3VHZ
DownloadVisualize
BU of 3vhz by Molmil
Crystal structure of the trans isomer of the L93A mutant of bacteriorhodopsin
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
Authors:Kouyama, T, Zhang, J.
Deposit date:2011-09-13
Release date:2012-06-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
3VI0
DownloadVisualize
BU of 3vi0 by Molmil
Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
Authors:Kouyama, T, Zhang, J.
Deposit date:2011-09-13
Release date:2012-06-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
1IW6
DownloadVisualize
BU of 1iw6 by Molmil
Crystal Structure of the Ground State of Bacteriorhodopsin
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, RETINAL, ...
Authors:Kouyama, T, Okumura, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-04-22
Release date:2002-12-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Specific Damage Induced by X-ray Radiation and Structural Changes in the Primary Photoreaction of Bacteriorhodopsin.
J.Mol.Biol., 324, 2002
1IOM
DownloadVisualize
BU of 1iom by Molmil
CRYSTAL STRUCTURE OF CITRATE SYNTHASE FROM THERMUS THERMOPHILUS HB8
Descriptor: CARBONATE ION, CITRATE SYNTHASE, GLYCEROL, ...
Authors:Kanamori, E, Kouyama, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-03-19
Release date:2003-07-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural comparison between the open and closed forms of citrate synthase from Thermus thermophilus HB8.
Biophys Physicobio., 12, 2015
5B0W
DownloadVisualize
BU of 5b0w by Molmil
Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, BACTERIORUBERIN, Halorhodopsin, ...
Authors:Kouyama, T, Chan, S.K.
Deposit date:2015-11-11
Release date:2016-07-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States
Biochemistry, 55, 2016
5ETZ
DownloadVisualize
BU of 5etz by Molmil
Structure of the all-trans isomer of pharaonis halorhodopsin in the absence of halide ions
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, BACTERIORUBERIN, Halorhodopsin, ...
Authors:Kouyama, T.
Deposit date:2015-11-18
Release date:2016-07-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States
Biochemistry, 55, 2016
2ZZL
DownloadVisualize
BU of 2zzl by Molmil
Structure of bacteriorhodopsin's M intermediate at pH 7
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, ...
Authors:Yamamoto, M, Kouyama, T.
Deposit date:2009-02-18
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal Structures of Different Substates of Bacteriorhodopsin's M Intermediate at Various pH Levels.
J.Mol.Biol., 2009
3ATR
DownloadVisualize
BU of 3atr by Molmil
Geranylgeranyl Reductase (GGR) from Sulfolobus acidocaldarius co-crystallized with its ligand
Descriptor: Conserved Archaeal protein, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, PYROPHOSPHATE, ...
Authors:Fujihashi, M, Sasaki, D, Iwata, Y, Yoshimura, T, Hemmi, H, Miki, K.
Deposit date:2011-01-12
Release date:2011-05-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mutation analysis of archaeal geranylgeranyl reductase
J.Mol.Biol., 409, 2011
4QRY
DownloadVisualize
BU of 4qry by Molmil
the ground state and the N intermediate of pharaonis halorhodopsin in complex with bromide ion
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, BROMIDE ION, Halorhodopsin, ...
Authors:Kouyama, T, Kawaguchi, H.
Deposit date:2014-07-02
Release date:2015-06-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of the L1, L2, N, and O States of pharaonis Halorhodopsin
Biophys.J., 108, 2015
2E0C
DownloadVisualize
BU of 2e0c by Molmil
crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7 at 2.0 A resolution
Descriptor: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase
Authors:Kouyama, T.
Deposit date:2006-10-06
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms.
Archaea, 2018, 2018
2E5M
DownloadVisualize
BU of 2e5m by Molmil
Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain 7
Descriptor: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kouyama, T, Kondo, H.
Deposit date:2006-12-22
Release date:2008-01-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms.
Archaea, 2018, 2018
7L4U
DownloadVisualize
BU of 7l4u by Molmil
Crystal structure of human monoacylglycerol lipase in complex with compound 1h
Descriptor: (5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one, CHLORIDE ION, Monoglyceride lipase
Authors:Qin, L, Lane, W, Skene, R.J, Dougan, D.
Deposit date:2020-12-21
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Design and Synthesis of Novel Spiro Derivatives as Potent and Reversible Monoacylglycerol Lipase (MAGL) Inhibitors: Bioisosteric Transformation from 3-Oxo-3,4-dihydro-2 H -benzo[ b ][1,4]oxazin-6-yl Moiety.
J.Med.Chem., 64, 2021
7L50
DownloadVisualize
BU of 7l50 by Molmil
Crystal structure of human monoacylglycerol lipase in complex with compound 4f
Descriptor: (2s,4R)-2-{3-[(3-chloro-4-methylphenyl)methoxy]azetidine-1-carbonyl}-7-oxa-5-azaspiro[3.4]octan-6-one, ACETATE ION, Monoglyceride lipase
Authors:Qin, L, Lane, W, Skene, R.J.
Deposit date:2020-12-21
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design and Synthesis of Novel Spiro Derivatives as Potent and Reversible Monoacylglycerol Lipase (MAGL) Inhibitors: Bioisosteric Transformation from 3-Oxo-3,4-dihydro-2 H -benzo[ b ][1,4]oxazin-6-yl Moiety.
J.Med.Chem., 64, 2021
7L4W
DownloadVisualize
BU of 7l4w by Molmil
Crystal structure of human monoacylglycerol lipase in complex with compound 2d
Descriptor: (2s,4R)-2-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-7-oxa-5-azaspiro[3.4]octan-6-one, Monoglyceride lipase
Authors:Qin, L, Gay, S.C, Lane, W, Skene, R.J.
Deposit date:2020-12-21
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design and Synthesis of Novel Spiro Derivatives as Potent and Reversible Monoacylglycerol Lipase (MAGL) Inhibitors: Bioisosteric Transformation from 3-Oxo-3,4-dihydro-2 H -benzo[ b ][1,4]oxazin-6-yl Moiety.
J.Med.Chem., 64, 2021
7L4T
DownloadVisualize
BU of 7l4t by Molmil
Crystal structure of human monoacylglycerol lipase in complex with compound 1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 6-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-2H-1,4-benzoxazin-3(4H)-one, ACETATE ION, ...
Authors:Qin, L, Gay, S.C, Lane, W, Skene, R.J.
Deposit date:2020-12-21
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design and Synthesis of Novel Spiro Derivatives as Potent and Reversible Monoacylglycerol Lipase (MAGL) Inhibitors: Bioisosteric Transformation from 3-Oxo-3,4-dihydro-2 H -benzo[ b ][1,4]oxazin-6-yl Moiety.
J.Med.Chem., 64, 2021
3VVK
DownloadVisualize
BU of 3vvk by Molmil
An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, AZIDE ION, BACTERIORUBERIN, ...
Authors:Kouyama, T, Nakanishi, T.
Deposit date:2012-07-26
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Large deformation of helix F during the photoreaction cycle of Pharaonis halorhodopsin in complex with azide
Biophys.J., 104, 2013
3WQJ
DownloadVisualize
BU of 3wqj by Molmil
Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution
Descriptor: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, ...
Authors:Kouyama, T.
Deposit date:2014-01-27
Release date:2014-10-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of archaerhodopsin-2 at 1.8 angstrom resolution.
Acta Crystallogr.,Sect.D, 70, 2014
4FBZ
DownloadVisualize
BU of 4fbz by Molmil
Crystal structure of deltarhodopsin from Haloterrigena thermotolerans
Descriptor: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, BACTERIORUBERIN, ...
Authors:Kouyama, T.
Deposit date:2012-05-23
Release date:2013-05-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans
Proteins, 81, 2013
4L35
DownloadVisualize
BU of 4l35 by Molmil
Crystal structure of cruxrhodopsin-3 at pH5 from Haloarcula vallismortis at 2.1 angstrom resolution
Descriptor: BACTERIORUBERIN, Cruxrhodopsin-3, RETINAL
Authors:Kouyama, T, Chan, S.K.
Deposit date:2013-06-05
Release date:2014-06-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Plos One, 9, 2014
4JR8
DownloadVisualize
BU of 4jr8 by Molmil
Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution
Descriptor: BACTERIORUBERIN, Cruxrhodopsin-3, RETINAL
Authors:Kouyama, T, Chan, S.K.
Deposit date:2013-03-21
Release date:2014-03-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Plos One, 9, 2014
3QBL
DownloadVisualize
BU of 3qbl by Molmil
Pharaonis halorhodopsin complexed with nitrate
Descriptor: BACTERIORUBERIN, Halorhodopsin, NITRATE ION, ...
Authors:Kouyama, T, Kanada, S.
Deposit date:2011-01-13
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of anion-free blue and yellow forms of pharaonis halorhodopsin
To be Published
3QBK
DownloadVisualize
BU of 3qbk by Molmil
Bromide-bound form of pharaonis halorhodopsin
Descriptor: BACTERIORUBERIN, BROMIDE ION, Halorhodopsin, ...
Authors:Kouyama, T, Kanada, S.
Deposit date:2011-01-13
Release date:2011-08-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin
J.Mol.Biol., 413, 2011
2ZFE
DownloadVisualize
BU of 2zfe by Molmil
Crystal structure of bacteriorhodopsin-xenon complex
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, ...
Authors:Kouyama, T.
Deposit date:2007-12-31
Release date:2008-11-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Effect of xenon binding to a hydrophobic cavity on the proton pumping cycle in bacteriorhodopsin
J.Mol.Biol., 384, 2008
3QBI
DownloadVisualize
BU of 3qbi by Molmil
Crystal structure of an anion-free yellow form of pharaonis halorhodopsin
Descriptor: BACTERIORUBERIN, Halorhodopsin, RETINAL, ...
Authors:Kouyama, T, Kanada, S.
Deposit date:2011-01-13
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin
J.Mol.Biol., 413, 2011
3QBG
DownloadVisualize
BU of 3qbg by Molmil
Anion-free blue form of pharaonis halorhodopsin
Descriptor: BACTERIORUBERIN, Halorhodopsin, RETINAL, ...
Authors:Kouyama, T, Kanada, S.
Deposit date:2011-01-13
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin
J.Mol.Biol., 413, 2011

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon