5YPE
 
 | | p62/SQSTM1 ZZ domain with Tyr-peptide | | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2017-11-01 | | Release date: | 2018-08-29 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.851 Å) | | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
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5YPA
 | | p62/SQSTM1 ZZ domain with Lys-peptide | | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2017-11-01 | | Release date: | 2018-08-29 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.502 Å) | | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
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5YP7
 | | p62/SQSTM1 ZZ domain | | Descriptor: | Sequestosome-1, ZINC ION | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2017-11-01 | | Release date: | 2018-08-29 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.424 Å) | | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
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5XAD
 | | NLIR - LC3B fusion protein | | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B, Uncharacterised protein | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2017-03-12 | | Release date: | 2017-07-12 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.88 Å) | | Cite: | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ
Biochem. Biophys. Res. Commun., 490, 2017
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5XAC
 | | CLIR - LC3B | | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2017-03-12 | | Release date: | 2017-07-12 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.701 Å) | | Cite: | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ
Biochem. Biophys. Res. Commun., 490, 2017
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5HZY
 | | Crystal structure of the legionella pneumophila effector protein RavZ - P6322 | | Descriptor: | Uncharacterized protein RavZ | | Authors: | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | | Deposit date: | 2016-02-03 | | Release date: | 2016-11-09 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.548 Å) | | Cite: | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane
Autophagy, 13, 2017
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5IO3
 | | Crystal structure of the legionella pneumophila effector protein RavZ - I422 | | Descriptor: | Uncharacterized protein RavZ | | Authors: | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | | Deposit date: | 2016-03-08 | | Release date: | 2016-11-09 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.74 Å) | | Cite: | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane
Autophagy, 13, 2017
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6KHZ
 | | p62/SQSTM1 ZZ domain with Gly-peptide | | Descriptor: | Sequestosome-1, ZINC ION | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2019-07-16 | | Release date: | 2020-01-22 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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7P80
 | | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state) | | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-06-29 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (2.98 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7P81
 | | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state) | | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-06-29 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (2.79 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7D34
 | | AtClpS1-peptide complex | | Descriptor: | ACETIC ACID, ALANINE, ATP-dependent Clp protease adapter protein CLPS1, ... | | Authors: | Heo, J, Kim, L, Kwon, D.H, Song, H.K. | | Deposit date: | 2020-09-18 | | Release date: | 2021-04-28 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.007 Å) | | Cite: | Structural basis for the N-degron specificity of ClpS1 from Arabidopsis thaliana.
Protein Sci., 30, 2021
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7FEQ
 | | Cryo-EM structure of apo BsClpP at pH 6.5 | | Descriptor: | ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2024-06-12 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FES
 | | Cryo-EM structure of apo BsClpP at pH 4.2 | | Descriptor: | ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2024-06-12 | | Method: | ELECTRON MICROSCOPY (3.4 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FER
 | | Cryo-EM structure of BsClpP-ADEP1 complex at pH 4.2 | | Descriptor: | ADEP1, ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2022-07-20 | | Method: | ELECTRON MICROSCOPY (3.4 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FEP
 | | Cryo-EM structure of BsClpP-ADEP1 complex at pH 6.5 | | Descriptor: | ADEP1, ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2022-07-20 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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6KGJ
 | | M1Q-hNTAQ1 C28S | | Descriptor: | Protein N-terminal glutamine amidohydrolase | | Authors: | Park, M.R, Kim, L, Kwon, D.H, Song, H.K. | | Deposit date: | 2019-07-11 | | Release date: | 2020-01-22 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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6KGI
 | | RLGS-yUbr1 Ubr box | | Descriptor: | E3 ubiquitin-protein ligase UBR1, ZINC ION | | Authors: | Heo, J, Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2019-07-11 | | Release date: | 2020-01-22 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.04 Å) | | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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6LHN
 | | RLGSGG-AtPRT6 UBR box | | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | Authors: | Kim, L, Kwon, D.H, Song, H.K. | | Deposit date: | 2019-12-09 | | Release date: | 2020-01-22 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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4HAN
 | | Crystal structure of Galectin 8 with NDP52 peptide | | Descriptor: | Calcium-binding and coiled-coil domain-containing protein 2, DI(HYDROXYETHYL)ETHER, Galectin-8, ... | | Authors: | Kim, B.-W, Hong, S.B, Kim, J.H, Kwon, D.H, Song, H.K. | | Deposit date: | 2012-09-27 | | Release date: | 2013-03-20 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.551 Å) | | Cite: | Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8.
Nat Commun, 4, 2013
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5YSK
 | | SdeA mART-C domain EE/AA apo | | Descriptor: | Ubiquitinating/deubiquitinating enzyme SdeA | | Authors: | Kim, L, Kwon, D.H, Song, H.K. | | Deposit date: | 2017-11-14 | | Release date: | 2018-08-29 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.403 Å) | | Cite: | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila
J. Mol. Biol., 430, 2018
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5YSI
 | | SdeA mART-C domain EE/AA NCA complex | | Descriptor: | NICOTINAMIDE, Ubiquitinating/deubiquitinating enzyme SdeA | | Authors: | Kim, L, Kwon, D.H, Song, H.K. | | Deposit date: | 2017-11-14 | | Release date: | 2018-08-29 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.546 Å) | | Cite: | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila
J. Mol. Biol., 430, 2018
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5YSJ
 | | SdeA mART-C domain WT apo | | Descriptor: | Ubiquitinating/deubiquitinating enzyme SdeA | | Authors: | Kim, L, Kwon, D.H, Song, H.K. | | Deposit date: | 2017-11-14 | | Release date: | 2018-08-29 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.059 Å) | | Cite: | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila
J. Mol. Biol., 430, 2018
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5JST
 | | MBP fused MDV1 coiled coil | | Descriptor: | ACETATE ION, GLYCEROL, Maltose-binding periplasmic protein,Mitochondrial division protein 1, ... | | Authors: | Kim, B.-W, Song, H.K. | | Deposit date: | 2016-05-09 | | Release date: | 2017-03-22 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.199 Å) | | Cite: | ACCORD: an assessment tool to determine the orientation of homodimeric coiled-coils.
Sci Rep, 7, 2017
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5EY0
 | | Crystal structure of CodY from Staphylococcus aureus with GTP and Ile | | Descriptor: | GTP-sensing transcriptional pleiotropic repressor CodY, GUANOSINE-5'-TRIPHOSPHATE, ISOLEUCINE | | Authors: | Han, A, Hwang, K.Y. | | Deposit date: | 2015-11-24 | | Release date: | 2016-09-14 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism
Nucleic Acids Res., 44, 2016
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5EY2
 | | Crystal structure of CodY from Bacillus cereus | | Descriptor: | GTP-sensing transcriptional pleiotropic repressor CodY | | Authors: | Han, A, Lee, W.C, Son, J, Kim, S.H, Hwang, K.Y. | | Deposit date: | 2015-11-24 | | Release date: | 2016-09-14 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism
Nucleic Acids Res., 44, 2016
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