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8I4K
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BU of 8i4k by Molmil
Structure of Azami Red1.0, a red fluorescent protein engineered from Azami Green
Descriptor: Azami Red1.0, CALCIUM ION
Authors:Otsubo, S, Takekawa, N, Imamura, H, Imada, K.
Deposit date:2023-01-19
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Red fluorescent proteins engineered from green fluorescent proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
1WLG
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BU of 1wlg by Molmil
Crystal structure of FlgE31, a major fragment of the hook protein
Descriptor: Flagellar hook protein flgE
Authors:Samatey, F.A, Matsunami, H, Imada, K, Nagashima, S, Shaikh, T.R, Thomas, D.R, DeRosier, D.J, Kitao, A, Namba, K.
Deposit date:2004-06-25
Release date:2004-11-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism.
Nature, 431, 2004
1IO1
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BU of 1io1 by Molmil
CRYSTAL STRUCTURE OF F41 FRAGMENT OF FLAGELLIN
Descriptor: PHASE 1 FLAGELLIN
Authors:Samatey, F.A, Imada, K, Nagashima, S, Vondervisz, F, Kumasaka, T, Yamamoto, M, Namba, K.
Deposit date:2000-12-28
Release date:2001-04-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling
Nature, 410, 2001
5AVE
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BU of 5ave by Molmil
The ligand binding domain of Mlp37 with serine
Descriptor: Methyl-accepting chemotaxis (MCP) signaling domain protein, SERINE
Authors:Takahashi, Y, Sumita, K, Uchida, Y, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2015-06-15
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5AVF
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BU of 5avf by Molmil
The ligand binding domain of Mlp37 with taurine
Descriptor: 2-AMINOETHANESULFONIC ACID, Methyl-accepting chemotaxis (MCP) signaling domain protein
Authors:Takahashi, Y, Sumita, K, Uchida, Y, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2015-06-15
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5B3D
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BU of 5b3d by Molmil
Structure of a flagellar type III secretion chaperone, FlgN
Descriptor: Flagella synthesis protein FlgN
Authors:Nakanishi, Y, Kinoshita, M, Namba, K, Minamino, T, Imada, K.
Deposit date:2016-02-15
Release date:2016-06-01
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rearrangements of alpha-helical structures of FlgN chaperone control the binding affinity for its cognate substrates during flagellar type III export
Mol.Microbiol., 101, 2016
6IOS
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BU of 6ios by Molmil
The ligand binding domain of Mlp24 with proline
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOP
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BU of 6iop by Molmil
The ligand binding domain of Mlp24
Descriptor: ACETATE ION, ALANINE, CALCIUM ION, ...
Authors:Sumita, K, Takahashi, Y, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOT
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BU of 6iot by Molmil
The ligand binding domain of Mlp24 with arginine
Descriptor: ARGININE, CALCIUM ION, Methyl-accepting chemotaxis protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOR
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BU of 6ior by Molmil
The ligand binding domain of Mlp24 with asparagine
Descriptor: ASPARAGINE, CALCIUM ION, Methyl-accepting chemotaxis protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOQ
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BU of 6ioq by Molmil
The ligand binding domain of Mlp24 with glycine
Descriptor: CALCIUM ION, GLYCINE, Methyl-accepting chemotaxis protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.143 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOU
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BU of 6iou by Molmil
The ligand binding domain of Mlp24 with serine
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Methyl-accepting chemotaxis protein, ...
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
2BGZ
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BU of 2bgz by Molmil
ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.
Descriptor: FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, Derosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (9 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
2BGY
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BU of 2bgy by Molmil
Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus.
Descriptor: FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, DeRosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (9 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
6IOV
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BU of 6iov by Molmil
The ligand binding domain of Mlp37 with arginine
Descriptor: ARGININE, Methyl-accepting chemotaxis (MCP) signaling domain protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis of the binding affinity of chemoreceptors Mlp24p and Mlp37p for various amino acids.
Biochem.Biophys.Res.Commun., 523, 2020
6JZJ
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BU of 6jzj by Molmil
Structure of FimA type-2 (FimA2) prepilin of the type V major fimbrium
Descriptor: Major fimbrium subunit FimA type-2, SULFATE ION
Authors:Okada, K, Shoji, M, Nakayam, K, Imada, K.
Deposit date:2019-05-02
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
6JZK
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BU of 6jzk by Molmil
Structure of FimA type-1 (FimA1) prepilin of the type V major fimbrium
Descriptor: GLYCEROL, Major fimbrium subunit FimA type-1, S,R MESO-TARTARIC ACID, ...
Authors:Okada, K, Shoji, M, Nakayam, K, Imada, K.
Deposit date:2019-05-02
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
6KJK
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BU of 6kjk by Molmil
Structure of the N-terminal domain of PorA
Descriptor: N-terminal domain of PorA (28-171)
Authors:Handa, Y, Sato, K, Shoji, M, Nakayama, K, Imada, K.
Deposit date:2019-07-22
Release date:2020-07-22
Last modified:2020-12-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:PorA, a conserved C-terminal domain-containing protein, impacts the PorXY-SigP signaling of the type IX secretion system.
Sci Rep, 10, 2020
6KMF
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BU of 6kmf by Molmil
FimA type V pilus from P.gingivalis
Descriptor: Major fimbrium subunit FimA type-1
Authors:Shibata, S, Shoji, M, Matsunami, H, Matthews, M, Imada, K, Nakayama, K, Wolf, M.
Deposit date:2019-07-31
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
5Y3Z
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BU of 5y3z by Molmil
Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 1)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ARGININE, IMIDAZOLE, ...
Authors:Takao, M, Kojima, S, Sakuma, M, Homma, M, Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
5Y40
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BU of 5y40 by Molmil
Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 2)
Descriptor: Motility protein B
Authors:Takao, M, Kojima, S, Sakuma, M, Homma, M, Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
6AI2
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BU of 6ai2 by Molmil
Structure of the 328-692 fragment of FlhA (F459A)
Descriptor: Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y, Kinoshita, M, Minamino, T, Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI1
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BU of 6ai1 by Molmil
Structure of the 328-692 fragment of FlhA (D456V)
Descriptor: Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y, Kinoshita, M, Minamino, T, Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI3
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BU of 6ai3 by Molmil
Structure of the 328-692 fragment of FlhA (T490M)
Descriptor: Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y, Kinoshita, M, Minamino, T, Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI0
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BU of 6ai0 by Molmil
Structure of the 328-692 fragment of FlhA (orthorhombic form)
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y, Kinoshita, M, Minamino, T, Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019

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