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4DT0
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BU of 4dt0 by Molmil
The structure of the peripheral stalk subunit E from Pyrococcus horikoshii
Descriptor: V-type ATP synthase subunit E
Authors:Balakrishna, A.M, Gruber, G.
Deposit date:2012-02-20
Release date:2012-05-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:The structure of subunit E of the Pyrococcus horikoshii OT3 A-ATP synthase gives insight into the elasticity of the peripheral stalk.
J.Mol.Biol., 420, 2012
7WN2
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BU of 7wn2 by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-01-17
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
7WNB
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BU of 7wnb by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-01-18
Release date:2023-04-19
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
7YOW
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BU of 7yow by Molmil
Crystal structure of SARS-CoV-2 omicron variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: Fab Heavy chain, Fab Light chain, SULFATE ION, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-08-02
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
3KL6
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BU of 3kl6 by Molmil
Discovery of Tetrahydropyrimidin-2(1H)-one derivative TAK-442: A potent, selective and orally active factor Xa inhibitor
Descriptor: 1,2-ETHANEDIOL, 1-(1-{(2S)-3-[(6-chloronaphthalen-2-yl)sulfonyl]-2-hydroxypropanoyl}piperidin-4-yl)tetrahydropyrimidin-2(1H)-one, CALCIUM ION, ...
Authors:Aertgeerts, K.
Deposit date:2009-11-06
Release date:2009-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Discovery of a tetrahydropyrimidin-2(1H)-one derivative (TAK-442) as a potent, selective, and orally active factor Xa inhibitor.
J.Med.Chem., 53, 2010
7C8I
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BU of 7c8i by Molmil
Ambient temperature structure of Bifidobacgterium longum phosphoketolase with thiamine diphosphate and phosphoenol pyuruvate
Descriptor: CALCIUM ION, PHOSPHOENOLPYRUVATE, THIAMINE DIPHOSPHATE, ...
Authors:Nakata, K, Kashiwagi, T, Nango, E, Miyano, H, Mizukoshi, T, Iwata, S.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ambient temperature structure of phosphoketolase from Bifidobacterium longum determined by serial femtosecond X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
7C8H
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BU of 7c8h by Molmil
Ambient temperature structure of Bifidobacterium longum phosphoketolase with thiamine diphosphate
Descriptor: (2S)-2-hydroxybutanedioic acid, CALCIUM ION, MALONIC ACID, ...
Authors:Nakata, K, Kashiwagi, T, Nango, E, Miyano, H, Mizukoshi, T, Iwata, S.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ambient temperature structure of phosphoketolase from Bifidobacterium longum determined by serial femtosecond X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
4OP3
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BU of 4op3 by Molmil
Human GKRP bound to AMG-5112 and Sorbitol-6-phosphate
Descriptor: (2S)-2-{6'-[(6-aminopyridin-3-yl)sulfonyl]-2'-(phenylamino)-2,3'-bipyridin-5-yl}-1,1,1-trifluoropropan-2-ol, D-SORBITOL-6-PHOSPHATE, GLYCEROL, ...
Authors:Jordan, S.R, Chmait, S.
Deposit date:2014-02-04
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Small Molecule Disruptors of the Glucokinase-Glucokinase Regulatory Protein Interaction: 5. A Novel Aryl Sulfone Series, Optimization Through Conformational Analysis.
J.Med.Chem., 58, 2015
2ENI
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BU of 2eni by Molmil
Mutant F197M structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-28
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutant F197M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
4OP1
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BU of 4op1 by Molmil
GKRP bound to AMG0556 and Sorbitol-6-Phosphate
Descriptor: (2S)-2-(6-{5-[(6-aminopyridin-3-yl)sulfonyl]thiophen-2-yl}-5-chloropyridin-3-yl)-1,1,1-trifluoropropan-2-ol, D-SORBITOL-6-PHOSPHATE, GLYCEROL, ...
Authors:Jordan, S.R, Chmait, S.
Deposit date:2014-02-04
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Small Molecule Disruptors of the Glucokinase-Glucokinase Regulatory Protein Interaction: 5. A Novel Aryl Sulfone Series, Optimization Through Conformational Analysis.
J.Med.Chem., 58, 2015
2ED3
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BU of 2ed3 by Molmil
Mutant I127M structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutant I127M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EEQ
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BU of 2eeq by Molmil
Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-16
Release date:2007-08-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2ENU
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BU of 2enu by Molmil
Mutant L121M structure of TTHB049 from Thermus thermophilus HB8
Descriptor: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-28
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mutant L121M structure of TTHB049 from Thermus thermophilus HB8
To be Published
2EEY
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BU of 2eey by Molmil
Structure of GK0241 protein from Geobacillus kaustophilus
Descriptor: Molybdopterin biosynthesis
Authors:Lokanath, N.K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-19
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure of GK0241 protein from Geobacillus kaustophilus
To be Published
2ED5
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BU of 2ed5 by Molmil
Mutant S147M structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, ...
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mutant S147M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2E55
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BU of 2e55 by Molmil
Structure of AQ2163 protein from Aquifex aeolicus
Descriptor: SULFATE ION, Uracil phosphoribosyltransferase
Authors:Lokanath, N.K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-19
Release date:2008-01-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of AQ2163 protein from Aquifex aeolicus
To be Published
4OP2
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BU of 4op2 by Molmil
GKRP bound to AMG-0471 and Sorbitol-6-Phosphate
Descriptor: (2S)-2-{4'-[(6-aminopyridin-3-yl)sulfonyl]biphenyl-4-yl}-1,1,1-trifluoropropan-2-ol, D-SORBITOL-6-PHOSPHATE, GLYCEROL, ...
Authors:Jordan, S.R, Chmait, S.
Deposit date:2014-02-04
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Small Molecule Disruptors of the Glucokinase-Glucokinase Regulatory Protein Interaction: 5. A Novel Aryl Sulfone Series, Optimization Through Conformational Analysis.
J.Med.Chem., 58, 2015
1BYO
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BU of 1byo by Molmil
WILD-TYPE PLASTOCYANIN FROM SILENE
Descriptor: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
Authors:Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
Deposit date:1998-10-19
Release date:1999-10-15
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
1BYP
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BU of 1byp by Molmil
E43K,D44K DOUBLE MUTANT PLASTOCYANIN FROM SILENE
Descriptor: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
Authors:Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
Deposit date:1998-10-19
Release date:1999-10-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
1WDE
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BU of 1wde by Molmil
Crystal structure of the conserved hypothetical protein APE0931 from Aeropyrum pernix K1
Descriptor: Probable diphthine synthase
Authors:Kishishita, S, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-13
Release date:2004-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
Acta Crystallogr.,Sect.D, 64, 2008
2ZFH
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BU of 2zfh by Molmil
Crystal structure of putative CutA1 from Homo sapiens at 2.05A resolution
Descriptor: CutA
Authors:Bagautdinov, B, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-07
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of putative CutA1 from Homo sapiens determined at 2.05 A resolution.
Acta Crystallogr.,Sect.F, 64, 2008
3AQA
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BU of 3aqa by Molmil
Crystal structure of the human BRD2 BD1 bromodomain in complex with a BRD2-interactive compound, BIC1
Descriptor: 1-[2-(1H-benzimidazol-2-ylsulfanyl)ethyl]-3-methyl-1,3-dihydro-2H-benzimidazole-2-thione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bromodomain-containing protein 2
Authors:Umehara, T, Nakamura, Y, Terada, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-10-27
Release date:2011-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Real-Time Imaging of Histone H4K12-Specific Acetylation Determines the Modes of Action of Histone Deacetylase and Bromodomain Inhibitors
Chem.Biol., 18, 2011
2ZV3
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BU of 2zv3 by Molmil
Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-31
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
To be published
2ZTI
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BU of 2zti by Molmil
Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes
Descriptor: MANGANESE (II) ION, NTPASE
Authors:Lokanath, N.K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-06
Release date:2008-10-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes
J.Mol.Biol., 375, 2008
2ZVB
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BU of 2zvb by Molmil
Crystal structure of TT0207 from Thermus thermophilus HB8
Descriptor: Precorrin-3 C17-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-11-04
Release date:2009-05-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of TT0207 from Thermus thermophilus HB8
To be published

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