Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2RAD
DownloadVisualize
BU of 2rad by Molmil
Crystal structure of the succinoglycan biosynthesis protein. Northeast structural Genomics Consortium target BcR135
Descriptor: Succinoglycan biosynthesis protein
Authors:Kuzin, A.P, Abashidze, M, Seetharaman, J, Wang, H, Mao, L, Cunningham, K, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-09-14
Release date:2007-10-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of the succinoglycan biosynthesis protein.
To be Published
4F2V
DownloadVisualize
BU of 4f2v by Molmil
Crystal Structure of de novo designed serine hydrolase, Northeast Structural Genomics Consortium (NESG) Target OR165
Descriptor: DI(HYDROXYETHYL)ETHER, DODECYL-ALPHA-D-MALTOSIDE, De novo designed serine hydrolase
Authors:Kuzin, A, Lew, S, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Rajagopalan, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-05-08
Release date:2012-05-30
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:Design of activated serine-containing catalytic triads with atomic-level accuracy.
Nat.Chem.Biol., 10, 2014
5GPL
DownloadVisualize
BU of 5gpl by Molmil
Crystal structure of Ccp1
Descriptor: Putative nucleosome assembly protein C36B7.08c
Authors:Yin, F, Gao, F, Chen, Y.
Deposit date:2016-08-03
Release date:2016-11-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ccp1 Homodimer Mediates Chromatin Integrity by Antagonizing CENP-A Loading
Mol.Cell, 64, 2016
6D6Y
DownloadVisualize
BU of 6d6y by Molmil
AprA Methyltransferase 2 - GNAT didomain in complex with SAH
Descriptor: AprA Methyltransferase 2, S-ADENOSYL-L-HOMOCYSTEINE, trimethylamine oxide
Authors:Sikkema, A.P, Smith, J.L.
Deposit date:2018-04-23
Release date:2018-05-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.246 Å)
Cite:Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module.
ACS Chem. Biol., 13, 2018
5GPK
DownloadVisualize
BU of 5gpk by Molmil
Crystal structure of Ccp1 mutant
Descriptor: Putative nucleosome assembly protein C36B7.08c
Authors:Yin, F, Gao, F, Chen, Y.
Deposit date:2016-08-03
Release date:2016-11-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Ccp1 Homodimer Mediates Chromatin Integrity by Antagonizing CENP-A Loading
Mol.Cell, 64, 2016
2HFD
DownloadVisualize
BU of 2hfd by Molmil
NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415
Descriptor: Hydrogenase-1 operon protein hyaE
Authors:Singarapu, K.K, Liu, G, Eletsky, A, Parish, D, Atreya, H.S, Xu, D, Janjua, H, Cunningham, K, Ma, L.C, Xiao, R, Liu, J, Baran, M, Swapna, G.V.T, Acton, T, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-06-23
Release date:2006-08-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif.
J.STRUCT.FUNCT.GENOM., 9, 2008
4ZKI
DownloadVisualize
BU of 4zki by Molmil
The crystal structure of Histidine Kinase YycG with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Histidine kinase
Authors:Cai, Y.
Deposit date:2015-04-30
Release date:2016-05-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.401 Å)
Cite:Conformational dynamics of the essential sensor histidine kinase WalK
Acta Crystallogr D Struct Biol, 73, 2017
8HF2
DownloadVisualize
BU of 8hf2 by Molmil
Cryo-EM structure of WeiTsing
Descriptor: PRA1 family protein
Authors:Qin, L, Tang, L.H, Chen, Y.H.
Deposit date:2022-11-09
Release date:2023-06-21
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:WeiTsing, a pericycle-expressed ion channel, safeguards the stele to confer clubroot resistance.
Cell, 186, 2023
8CZJ
DownloadVisualize
BU of 8czj by Molmil
A bacteria Zrt/Irt-like protein in the apo state
Descriptor: Putative membrane protein, SULFATE ION, [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate
Authors:Zhang, Y, Hu, J.
Deposit date:2022-05-24
Release date:2023-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Structural insights into the elevator-type transport mechanism of a bacterial ZIP metal transporter.
Nat Commun, 14, 2023
2BJY
DownloadVisualize
BU of 2bjy by Molmil
The X-ray crystal structure of Listeria innocua Dps H31G-H43G mutant.
Descriptor: NON-HEME IRON-CONTAINING FERRITIN
Authors:Ilari, A, Stefanini, S, Chiancone, E.
Deposit date:2005-02-08
Release date:2005-02-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Unusual Intersubunit Ferroxidase Center of Listeria Innocua Dps is Required for Hydrogen Peroxide Detoxification But not for Iron Uptake. A Study with Site-Specific Mutants
Biochemistry, 44, 2005
2BKC
DownloadVisualize
BU of 2bkc by Molmil
The X-ray structure of the H43G Listeria innocua Dps mutant
Descriptor: NON-HEME IRON-CONTAINING FERRITIN
Authors:Ilari, A, Stefanini, S, Chiancone, E.
Deposit date:2005-02-15
Release date:2005-02-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The unusual intersubunit ferroxidase center of Listeria innocua Dps is required for hydrogen peroxide detoxification but not for iron uptake. A study with site-specific mutants.
Biochemistry, 44, 2005
5C93
DownloadVisualize
BU of 5c93 by Molmil
Histidine kinase with ATP
Descriptor: Histidine kinase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION
Authors:Cai, Y.
Deposit date:2015-06-26
Release date:2016-07-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.518 Å)
Cite:Conformational dynamics of the essential sensor histidine kinase WalK.
Acta Crystallogr D Struct Biol, 73, 2017
8JCN
DownloadVisualize
BU of 8jcn by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 58
Descriptor: 1-[3-(diphenoxyphosphorylamino)phenyl]ethanone, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCK
DownloadVisualize
BU of 8jck by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 32
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCM
DownloadVisualize
BU of 8jcm by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 55
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, HYDROSULFURIC ACID, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCO
DownloadVisualize
BU of 8jco by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 65
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, methyl (2S)-2-[[3-(4-chloranylbutanoyl)phenyl]carbonylamino]-3-methyl-butanoate
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCL
DownloadVisualize
BU of 8jcl by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 52
Descriptor: 3-ethanoyl-N-phenyl-benzamide, 3C-like proteinase nsp5, HYDROSULFURIC ACID
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCJ
DownloadVisualize
BU of 8jcj by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 18
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8ZY2
DownloadVisualize
BU of 8zy2 by Molmil
Sarbecovirus BANAL-20-52 Spike Trimer in a Locked Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BILIVERDINE IX ALPHA, ...
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025
8ZY9
DownloadVisualize
BU of 8zy9 by Molmil
Ra9479 Bat ACE2 Dimer in Complex with Two BtKY72 Sarbecovirus Spike RBDs.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025
8ZY7
DownloadVisualize
BU of 8zy7 by Molmil
Sarbecovirus HeB2013 Spike Trimer in a Locked Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025
8ZY4
DownloadVisualize
BU of 8zy4 by Molmil
Sarbecovirus YN2013 Spike Trimer in a Locked Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, ...
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025
8ZY6
DownloadVisualize
BU of 8zy6 by Molmil
Sarbecovirus GX2013 Spike Trimer in a Locked Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025
8ZY3
DownloadVisualize
BU of 8zy3 by Molmil
Sarbecovirus BANAL-20-236 Spike Trimer in a Locked Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025
8ZY1
DownloadVisualize
BU of 8zy1 by Molmil
Sarbecovirus BM48-31 Spike Trimer in a Locked Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LINOLEIC ACID, ...
Authors:Wang, J, Xiong, X.
Deposit date:2024-06-16
Release date:2025-02-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:SARS-related coronavirus S-protein structures reveal synergistic RBM interactions underpinning high-affinity human ACE2 binding.
Sci Adv, 11, 2025

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon