Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
CTR
CTR
Name:CELLOTRIOSE
Formula:C18 H32 O16
SMILES:O(C1C(OC(O)C(O)C1O)CO)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO
InChi:InChI=1S/C18H32O16/c19-1-4-7(22)8(23)12(27)17(31-4)34-15-6(3-21)32-18(13(28)10(15)25)33-14-5(2-20)30-16(29)11(26)9(14)24/h4-29H,1-3H2/t4-,5-,6-,7-,8+,9-,10-,11-,12-,13-,14-,15-,16+,17+,18+/m1/s1
Synonyms:Dextrin
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-alpha-D-glucopyranose
CTT
CTT
Name:beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranose
Formula:C24 H42 O21
SMILES:O(C2C(OC(OC1C(O)C(O)C(O)OC1CO)C(O)C2O)CO)C4OC(C(OC3OC(CO)C(O)C(O)C3O)C(O)C4O)CO
InChi:InChI=1S/C24H42O21/c25-1-5-9(29)10(30)15(35)22(40-5)44-19-7(3-27)42-24(17(37)12(19)32)45-20-8(4-28)41-23(16(36)13(20)33)43-18-6(2-26)39-21(38)14(34)11(18)31/h5-38H,1-4H2/t5-,6-,7-,8-,9-,10+,11-,12-,13-,14-,15-,16-,17-,18-,19-,20-,21-,22+,23+,24+/m1/s1
Synonyms:CELLOTETRAOSE
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranose
D0N
D0N
Name:(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{S})-4-fluoranyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)oxan- 3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
Formula:C12 H21 F O10
SMILES:OC[CH]1O[CH](O[CH]2[CH](F)[CH](O)[CH](O)O[CH]2CO)[CH](O)[CH](O)[CH]1O
InChi:InChI=1S/C12H21FO10/c13-5-7(17)11(20)21-4(2-15)10(5)23-12-9(19)8(18)6(16)3(1-14)22-12/h3-12,14-20H,1-2H2/t3-,4-,5-,6-,7-,8+,9-,10-,11+,12-/m1/s1
Definition date:2017-12-15
Last modified:2020-07-17
Release date:2019-01-30
Identifier:(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{S})-4-fluoranyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
D1M
D1M
Name:5-ethynyl-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione
Formula:C12 H14 N2 O7
SMILES:O=C1NC(=O)N(C=C1C#C)C2OC(C(O)C(O)C2O)CO
InChi:InChI=1S/C12H14N2O7/c1-2-5-3-14(12(20)13-10(5)19)11-9(18)8(17)7(16)6(4-15)21-11/h1,3,6-9,11,15-18H,4H2,(H,13,19,20)/t6-,7-,8+,9-,11-/m1/s1
Synonyms:5-ethynyl-1-(beta-D-glucosyl)pyrimidine-2,4(1H,3H)-dione
Definition date:2012-04-12
Last modified:2020-07-17
Identifier:5-ethynyl-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione
1CF
1CF
Name:2-hydroxyethyl 6-deoxy-beta-L-galactopyranoside
Formula:C8 H16 O6
SMILES:O(CCO)C1OC(C(O)C(O)C1O)C
InChi:InChI=1S/C8H16O6/c1-4-5(10)6(11)7(12)8(14-4)13-3-2-9/h4-12H,2-3H2,1H3/t4-,5+,6+,7-,8-/m0/s1
Synonyms:2-hydroxyethyl 6-deoxy-beta-L-galactoside
Definition date:2012-12-04
Last modified:2020-07-17
Release date:2014-01-29
Identifier:2-hydroxyethyl 6-deoxy-beta-L-galactopyranoside
DYM
DYM
Name:(2R)-2,3-dihydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid
Formula:C11 H17 N O8
SMILES:C(C1=CC(C(C(O1)OCC(CO)O)NC(C)=O)O)(=O)O
InChi:InChI=1S/C11H17NO8/c1-5(14)12-9-7(16)2-8(10(17)18)20-11(9)19-4-6(15)3-13/h2,6-7,9,11,13,15-16H,3-4H2,1H3,(H,12,14)(H,17,18)/t6-,7+,9-,11-/m1/s1
Synonyms:6-(2,3-DIHYDROXYPROPOXY)-5-ACETAMIDO-5,6-DIHYDRO-4-HYDROXY-4H-PYRAN-2-CARBOXYLIC ACID
Definition date:2005-11-28
Last modified:2020-07-17
Identifier:(2R)-2,3-dihydroxypropyl 2-(acetylamino)-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid
E3M
E3M
Name:(1R)-4-acetamido-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol
Formula:C10 H20 N2 O8 S
SMILES:C1(OC(C(C(C1)N)NC(C)=O)C(C(CO)O)O)S(O)(=O)=O
InChi:InChI=1S/C10H20N2O8S/c1-4(14)12-8-5(11)2-7(21(17,18)19)20-10(8)9(16)6(15)3-13/h5-10,13,15-16H,2-3,11H2,1H3,(H,12,14)(H,17,18,19)/t5-,6+,7+,8+,9+,10+/m0/s1
Synonyms:(1R)-4-(acetylamino)-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol
Definition date:2017-11-30
Last modified:2020-07-17
Release date:2018-03-07
Identifier:(1R)-4-(acetylamino)-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol
E5G
E5G
Name:5-hydroxypentyl alpha-D-glucopyranoside
Formula:C11 H22 O7
SMILES:O(CCCCCO)C1OC(C(O)C(O)C1O)CO
InChi:InChI=1S/C11H22O7/c12-4-2-1-3-5-17-11-10(16)9(15)8(14)7(6-13)18-11/h7-16H,1-6H2/t7-,8-,9+,10-,11+/m1/s1
Synonyms:5-hydroxypentyl alpha-D-glucoside
Definition date:2012-01-11
Last modified:2020-07-17
Identifier:5-hydroxypentyl alpha-D-glucopyranoside
EAG
EAG
Name:2-aminoethyl 2-acetamido-2-deoxy-beta-D-glucopyranoside
Formula:C10 H20 N2 O6
SMILES:O=C(NC1C(O)C(O)C(OC1OCCN)CO)C
InChi:InChI=1S/C10H20N2O6/c1-5(14)12-7-9(16)8(15)6(4-13)18-10(7)17-3-2-11/h6-10,13,15-16H,2-4,11H2,1H3,(H,12,14)/t6-,7-,8-,9-,10-/m1/s1
Synonyms:2-aminoethyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranoside
Definition date:2008-01-23
Last modified:2020-07-17
Identifier:2-aminoethyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranoside
0HX
0HX
Name:pentan-3-yl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid
Formula:C13 H21 N O6
SMILES:CCC(CC)O[CH]1OC(=C[CH](O)[CH]1NC(C)=O)C(O)=O
InChi:InChI=1S/C13H21NO6/c1-4-8(5-2)19-13-11(14-7(3)15)9(16)6-10(20-13)12(17)18/h6,8-9,11,13,16H,4-5H2,1-3H3,(H,14,15)(H,17,18)/t9-,11+,13+/m0/s1
Synonyms:pentan-3-yl 2-(acetylamino)-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid
Definition date:2012-01-19
Last modified:2020-07-17
Release date:2013-02-08
Identifier:(2~{R},3~{R},4~{S})-3-acetamido-4-oxidanyl-2-pentan-3-yloxy-3,4-dihydro-2~{H}-pyran-6-carboxylic acid
95Z
95Z
Name:2-amino-2-deoxy-alpha-D-mannopyranose
Formula:C6 H13 N O5
SMILES:N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O
InChi:InChI=1S/C6H13NO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1,7H2/t2-,3+,4-,5-,6+/m1/s1
Synonyms:alpha-D-mannosamine
Definition date:2017-04-25
Last modified:2020-07-17
Release date:2017-12-27
Identifier:(2~{S},3~{S},4~{R},5~{S},6~{R})-3-azanyl-6-(hydroxymethyl)oxane-2,4,5-triol
96O
96O
Name:(1-methyl-1H-1,2,3-triazol-4-yl)methyl alpha-D-mannopyranoside
Formula:C10 H17 N3 O6
SMILES:C2(C(C(C(OCc1nnn(C)c1)OC2CO)O)O)O
InChi:InChI=1S/C10H17N3O6/c1-13-2-5(11-12-13)4-18-10-9(17)8(16)7(15)6(3-14)19-10/h2,6-10,14-17H,3-4H2,1H3/t6-,7-,8+,9+,10+/m1/s1
Synonyms:(1-methyl-1H-1,2,3-triazol-4-yl)methyl alpha-D-mannoside
Definition date:2018-01-25
Last modified:2020-07-17
Release date:2019-04-10
Identifier:(1-methyl-1H-1,2,3-triazol-4-yl)methyl alpha-D-mannopyranoside
0LP
0LP
Name:5-acetamido-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-phenylprop-2-en-1-yl]-D-glycero-L-altro-non-2-enonic acid
Formula:C20 H25 N O8
SMILES:CC(=O)NC1C(O)C(=C(OC1C(O)C(O)CO)C(O)=O)C[C@H]=Cc2ccccc2
InChi:InChI=1S/C20H25NO8/c1-11(23)21-15-16(25)13(9-5-8-12-6-3-2-4-7-12)18(20(27)28)29-19(15)17(26)14(24)10-22/h2-8,14-17,19,22,24-26H,9-10H2,1H3,(H,21,23)(H,27,28)/b8-5+/t14-,15-,16+,17+,19-/m1/s1
Synonyms:5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-phenylprop-2-en-1-yl]-D-glycero-L-altro-non-2-enonic acid
Definition date:2012-08-16
Last modified:2020-07-17
Release date:2012-09-21
Identifier:5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-phenylprop-2-en-1-yl]-D-glycero-L-altro-non-2-enonic acid
0MK
0MK
Name:beta-L-ribopyranose
Formula:C5 H10 O5
SMILES:C1(O)C(O)C(O)C(CO1)O
InChi:InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4-,5-/m0/s1
Synonyms:beta-L-ribose
Definition date:2012-03-01
Last modified:2020-07-17
Release date:2013-03-20
Identifier:beta-L-ribopyranose
9AM
9AM
Name:9-AMINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
Formula:C11 H18 N2 O7
SMILES:O=C(O)C=1OC(C(O)C(O)CN)C(NC(=O)C)C(O)C=1
InChi:InChI=1S/C11H18N2O7/c1-4(14)13-8-5(15)2-7(11(18)19)20-10(8)9(17)6(16)3-12/h2,5-6,8-10,15-17H,3,12H2,1H3,(H,13,14)(H,18,19)/t5-,6+,8+,9+,10+/m0/s1
Definition date:2000-07-21
Last modified:2020-07-17
Identifier:5-(acetylamino)-9-amino-2,6-anhydro-3,5,9-trideoxy-D-glycero-D-galacto-non-2-enonic acid
0NZ
0NZ
Name:2-deoxy-6-O-phosphono-beta-D-glucopyranose
Formula:C6 H13 O8 P
SMILES:O=P(O)(O)OCC1OC(O)CC(O)C1O
InChi:InChI=1S/C6H13O8P/c7-3-1-5(8)14-4(6(3)9)2-13-15(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4-,5-,6+/m1/s1
Synonyms:2-deoxy-6-O-phosphono-beta-D-arabino-hexopyranose
Definition date:2012-08-17
Last modified:2020-07-17
Release date:2013-06-12
Identifier:2-deoxy-6-O-phosphono-beta-D-arabino-hexopyranose
9GP
9GP
Name:N-(hydroxyacetyl)-beta-D-glucopyranosylamine
Formula:C8 H15 N O7
SMILES:O=C(NC1OC(C(O)C(O)C1O)CO)CO
InChi:InChI=1S/C8H15NO7/c10-1-3-5(13)6(14)7(15)8(16-3)9-4(12)2-11/h3,5-8,10-11,13-15H,1-2H2,(H,9,12)/t3-,5-,6+,7-,8-/m1/s1
Synonyms:N-(hydroxyacetyl)-beta-D-glucosylamine
Definition date:2009-02-05
Last modified:2020-07-17
Identifier:N-(hydroxyacetyl)-beta-D-glucopyranosylamine
0TS
0TS
Name:beta-D-glucopyranosyl-(1->4)-4-thio-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-4-thio-beta-D-glucopyrano syl-(1->4)-1-thio-beta-D-glucopyranose
Formula:C30 H52 O23 S3
SMILES:S(C2C(OC(OC1C(O)C(O)C(S)OC1CO)C(O)C2O)CO)C5OC(C(OC4OC(CO)C(SC3OC(CO)C(O)C(O)C3O)C(O)C4O)C(O)C5O)CO
InChi:InChI=1S/C30H52O23S3/c31-1-6-11(36)12(37)20(45)29(50-6)55-24-9(4-34)48-27(18(43)15(24)40)53-23-8(3-33)51-30(21(46)14(23)39)56-25-10(5-35)47-26(17(42)16(25)41)52-22-7(2-32)49-28(54)19(44)13(22)38/h6-46,54H,1-5H2/t6-,7-,8-,9-,10-,11-,12+,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23-,24-,25-,26+,27+,28+,29+,30+/m1/s1
Synonyms:hemithiocellodextrin
Definition date:2012-06-08
Last modified:2020-07-17
Identifier:beta-D-glucopyranosyl-(1->4)-4-thio-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-4-thio-beta-D-glucopyranosyl-(1->4)-1-thio-beta-D-glucopyranose
0UB
0UB
Name:beta-D-fructofuranosyl-(2->6)-beta-D-fructofuranosyl-(2->6)-beta-D-fructofuranose
Formula:C18 H32 O16
SMILES:O3C(COC1(OC(C(O)C1O)COC2(OC(CO)C(O)C2O)CO)CO)C(O)C(O)C3(O)CO
InChi:InChI=1S/C18H32O16/c19-1-7-10(23)14(27)17(5-21,33-7)31-3-9-12(25)15(28)18(6-22,34-9)30-2-8-11(24)13(26)16(29,4-20)32-8/h7-15,19-29H,1-6H2/t7-,8-,9-,10-,11-,12-,13+,14+,15+,16-,17-,18-/m1/s1
Synonyms:Levantriose
Definition date:2012-06-15
Last modified:2020-07-17
Identifier:beta-D-fructofuranosyl-(2->6)-beta-D-fructofuranosyl-(2->6)-beta-D-fructofuranose
0WK
0WK
Name:1,5-anhydro-6-O-phosphono-D-glucitol
Formula:C6 H13 O8 P
SMILES:O=P(O)(O)OCC1OCC(O)C(O)C1O
InChi:InChI=1S/C6H13O8P/c7-3-1-13-4(6(9)5(3)8)2-14-15(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4+,5+,6+/m0/s1
Definition date:2012-07-24
Last modified:2020-07-17
Release date:2013-07-03
Identifier:1,5-anhydro-6-O-phosphono-D-glucitol
FK9
FK9
Name:3-(propylsulfanyl)propyl alpha-D-mannopyranoside
Formula:C12 H24 O6 S
SMILES:O(CCCSCCC)C1OC(C(O)C(O)C1O)CO
InChi:InChI=1S/C12H24O6S/c1-2-5-19-6-3-4-17-12-11(16)10(15)9(14)8(7-13)18-12/h8-16H,2-7H2,1H3/t8-,9-,10+,11+,12+/m1/s1
Synonyms:PROPYL THIOPROPYL ALPHA-D-MANNOPYRANOSIDE
Definition date:2012-05-26
Last modified:2020-07-17
Identifier:3-(propylsulfanyl)propyl alpha-D-mannopyranoside
FMO
FMO
Name:2-deoxy-2,2-difluoro-4-O-alpha-D-glucopyranosyl-alpha-D-arabino-hexopyranosyl fluoride
Formula:C12 H19 F3 O9
SMILES:FC2(F)C(O)C(OC1OC(C(O)C(O)C1O)CO)C(OC2F)CO
InChi:InChI=1S/C12H19F3O9/c13-11-12(14,15)9(21)8(4(2-17)23-11)24-10-7(20)6(19)5(18)3(1-16)22-10/h3-11,16-21H,1-2H2/t3-,4-,5-,6+,7-,8-,9+,10-,11+/m1/s1
Synonyms:1,2,2-trifluoromaltose
Definition date:2014-07-24
Last modified:2020-07-17
Release date:2015-07-22
Identifier:2-deoxy-2,2-difluoro-4-O-alpha-D-glucopyranosyl-alpha-D-arabino-hexopyranosyl fluoride
FNG
FNG
Name:5-aminocarbonyl-3-nitrophenyl alpha-D-galactopyranoside
Formula:C13 H16 N2 O9
SMILES:[O-][N+](=O)c2cc(OC1OC(C(O)C(O)C1O)CO)cc(C(=O)N)c2
InChi:InChI=1S/C13H16N2O9/c14-12(20)5-1-6(15(21)22)3-7(2-5)23-13-11(19)10(18)9(17)8(4-16)24-13/h1-3,8-11,13,16-19H,4H2,(H2,14,20)/t8-,9+,10+,11-,13+/m1/s1
Synonyms:5-AMINOCARBONYL-3-NITROPHENYL-ALPHA-D-GALACTOPYRANOSE
Definition date:2002-05-09
Last modified:2020-07-17
Identifier:3-(alpha-D-galactopyranosyloxy)-5-nitrobenzamide
FNY
FNY
Name:1-FRUCTOFURANOSYL-D-NYSTOSE
Formula:C30 H52 O26
SMILES:OC[CH]1O[CH](O[C]2(CO[C]3(CO[C]4(CO[C]5(CO)O[CH](CO)[CH](O)[CH]5O)O[CH](CO)[CH](O)[CH]4O)O[CH](CO)[CH](O)[CH]3O)O[CH](CO)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O
InChi:InChI=1S/C30H52O26/c31-1-10-15(37)20(42)21(43)26(51-10)56-30(25(47)19(41)14(5-35)55-30)9-50-29(24(46)18(40)13(4-34)54-29)8-49-28(23(45)17(39)12(3-33)53-28)7-48-27(6-36)22(44)16(38)11(2-32)52-27/h10-26,31-47H,1-9H2/t10-,11+,12+,13+,14+,15+,16+,17+,18+,19-,20+,21+,22-,23-,24-,25+,26+,27+,28+,29+,30-/m0/s1
Definition date:2016-06-10
Last modified:2020-07-17
Release date:2017-01-18
Identifier:(2R,3R,4R,5S,6S)-2-[(2S,3R,4R,5R)-2-[[(2R,3S,4S,5R)-2-[[(2R,3S,4S,5R)-2-[[(2R,3S,4S,5R)-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxymethyl]-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxymethyl]-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxymethyl]-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
12E
12E
Name:N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-beta-D-glucopyranosylamine
Formula:C13 H18 N4 O5 S
SMILES:S=C(NC1OC(C(O)C(O)C1O)CO)N/N=C/c2ccncc2
InChi:InChI=1S/C13H18N4O5S/c18-6-8-9(19)10(20)11(21)12(22-8)16-13(23)17-15-5-7-1-3-14-4-2-7/h1-5,8-12,18-21H,6H2,(H2,16,17,23)/b15-5+/t8-,9-,10+,11-,12-/m1/s1
Synonyms:4-pyridinecarboxaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone
Definition date:2010-04-30
Last modified:2020-07-17
Identifier:N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazinyl]carbothioyl}-beta-D-glucopyranosylamine

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon