Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
RM4
RM4
Name:beta-L-rhamnopyranose
Formula:C6 H12 O5
SMILES:OC1C(O)C(OC(O)C1O)C
InChi:InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6-/m0/s1
Synonyms:beta-L-rhamnose
Definition date:2008-10-22
Last modified:2020-07-17
Identifier:6-deoxy-beta-L-mannopyranose
RP3
RP3
Name:3-deoxy-5-O-phosphono-beta-D-ribofuranose
Formula:C5 H11 O7 P
SMILES:OP(O)(=O)OCC1OC(C(C1)O)O
InChi:InChI=1S/C5H11O7P/c6-4-1-3(12-5(4)7)2-11-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5+/m0/s1
Synonyms:3'-deoxy-D-ribofuranose-5'-phosphate
Definition date:2015-07-28
Last modified:2020-07-17
Release date:2015-10-21
Identifier:3-deoxy-5-O-phosphono-beta-D-erythro-pentofuranose
RP5
RP5
Name:5-O-phosphono-beta-D-ribofuranose
Formula:C5 H11 O8 P
SMILES:O=P(O)(O)OCC1OC(O)C(O)C1O
InChi:InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1
Synonyms:[(2R,3S,4S,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE
Definition date:2003-04-30
Last modified:2020-07-17
Identifier:5-O-phosphono-beta-D-ribofuranose
9KJ
9KJ
Name:{[(2R,3R,4R,5R)-3-(alpha-D-glucopyranosyloxy)-4-hydroxy-2,5-bis(hydroxymethyl)pyrrolidin-1-yl]methyl}phosphonic acid
Formula:C13 H26 N O12 P
SMILES:C(C2C(OC1C(O)C(C(C(CO)O1)O)O)C(C(N2CP(=O)(O)O)CO)O)O
InChi:InChI=1S/C13H26NO12P/c15-1-5-8(18)12(6(2-16)14(5)4-27(22,23)24)26-13-11(21)10(20)9(19)7(3-17)25-13/h5-13,15-21H,1-4H2,(H2,22,23,24)/t5-,6-,7-,8-,9-,10+,11-,12-,13-/m1/s1
Synonyms:{[(2R,3R,4R,5R)-3-(alpha-D-glucosyloxy)-4-hydroxy-2,5-bis(hydroxymethyl)pyrrolidin-1-yl]methyl}phosphonic acid
Definition date:2017-05-17
Last modified:2020-07-17
Release date:2017-06-07
Identifier:{[(2R,3R,4R,5R)-3-(alpha-D-glucopyranosyloxy)-4-hydroxy-2,5-bis(hydroxymethyl)pyrrolidin-1-yl]methyl}phosphonic acid
MVP
MVP
Name:(1S)-1,5-anhydro-4-O-alpha-D-glucopyranosyl-1-(phosphonomethyl)-D-glucitol
Formula:C13 H25 O13 P
SMILES:P(O)(O)(CC2C(C(C(OC1C(C(O)C(C(O1)CO)O)O)C(O2)CO)O)O)=O
InChi:InChI=1S/C13H25O13P/c14-1-4-7(16)9(18)11(20)13(25-4)26-12-5(2-15)24-6(3-27(21,22)23)8(17)10(12)19/h4-20H,1-3H2,(H2,21,22,23)/t4-,5-,6-,7-,8+,9+,10-,11-,12-,13-/m1/s1
Synonyms:alpha-maltose-c-phosphonate
Definition date:2014-07-24
Last modified:2020-07-17
Release date:2015-07-22
Identifier:(1S)-1,5-anhydro-4-O-alpha-D-glucopyranosyl-1-(phosphonomethyl)-D-glucitol
9NW
9NW
Name:2,5-bis(chloranyl)-~{N}-[[5-[(cyclohexylamino)methyl]-2~{H}-1,2,3-triazol-4-yl]methyl]benzenesulfonamide
Formula:C16 H21 Cl2 N5 O2 S
SMILES:Clc1ccc(Cl)c(c1)[S](=O)(=O)NCc2n[nH]nc2CNC3CCCCC3
InChi:InChI=1S/C16H21Cl2N5O2S/c17-11-6-7-13(18)16(8-11)26(24,25)20-10-15-14(21-23-22-15)9-19-12-4-2-1-3-5-12/h6-8,12,19-20H,1-5,9-10H2,(H,21,22,23)
Definition date:2017-06-13
Last modified:2020-07-17
Release date:2020-07-22
Identifier:2,5-bis(chloranyl)-~{N}-[[5-[(cyclohexylamino)methyl]-2~{H}-1,2,3-triazol-4-yl]methyl]benzenesulfonamide
9OK
9OK
Name:2-(3,4-dihydroxyphenyl)ethyl beta-D-fructofuranoside
Formula:C14 H20 O8
SMILES:OC[CH]1O[C](CO)(OCCc2ccc(O)c(O)c2)[CH](O)[CH]1O
InChi:InChI=1S/C14H20O8/c15-6-11-12(19)13(20)14(7-16,22-11)21-4-3-8-1-2-9(17)10(18)5-8/h1-2,5,11-13,15-20H,3-4,6-7H2/t11-,12-,13+,14-/m1/s1
Synonyms:fructosyl-hydroxytyrosol
Definition date:2017-06-19
Last modified:2020-07-17
Release date:2018-11-28
Identifier:(2~{R},3~{S},4~{S},5~{R})-2-[2-[3,4-bis(oxidanyl)phenyl]ethoxy]-2,5-bis(hydroxymethyl)oxolane-3,4-diol
MXY
MXY
Name:2-O-methyl-beta-L-fucopyranose
Formula:C7 H14 O5
SMILES:O(C)C1C(O)C(O)C(OC1O)C
InChi:InChI=1S/C7H14O5/c1-3-4(8)5(9)6(11-2)7(10)12-3/h3-10H,1-2H3/t3-,4+,5+,6-,7-/m0/s1
Synonyms:2-O-METHYL FUCOSE
Definition date:1999-11-08
Last modified:2020-07-17
Identifier:6-deoxy-2-O-methyl-beta-L-galactopyranose
MXZ
MXZ
Name:2-O-methyl-alpha-L-fucopyranose
Formula:C7 H14 O5
SMILES:O(C)C1C(O)C(O)C(OC1O)C
InChi:InChI=1S/C7H14O5/c1-3-4(8)5(9)6(11-2)7(10)12-3/h3-10H,1-2H3/t3-,4+,5+,6-,7+/m0/s1
Synonyms:6-DEOXY-2-O-METHYL-ALPHA-L-GALACTOPYRANOSE
Definition date:2003-04-15
Last modified:2020-07-17
Identifier:6-deoxy-2-O-methyl-alpha-L-galactopyranose
MYG
MYG
Name:(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside
Formula:C12 H23 N O10
SMILES:O(C1C(O)C(O)C(O)C(O)C1O)C2OC(C(O)C(O)C2N)CO
InChi:InChI=1S/C12H23NO10/c13-3-5(16)4(15)2(1-14)22-12(3)23-11-9(20)7(18)6(17)8(19)10(11)21/h2-12,14-21H,1,13H2/t2-,3-,4-,5-,6-,7-,8-,9+,10-,11-,12-/m1/s1
Synonyms:GLUCOSAMINYL-(ALPHA-6)-D-MYO-INOSITOL
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside
9PG
9PG
Name:4-nitrophenyl alpha-D-galactopyranoside
Formula:C12 H15 N O8
SMILES:C(C1OC(C(C(C1O)O)O)Oc2ccc([N+]([O-])=O)cc2)O
InChi:InChI=1S/C12H15NO8/c14-5-8-9(15)10(16)11(17)12(21-8)20-7-3-1-6(2-4-7)13(18)19/h1-4,8-12,14-17H,5H2/t8-,9+,10+,11-,12+/m1/s1
Synonyms:4-nitrophenyl alpha-D-galactoside
Definition date:2015-05-22
Last modified:2020-07-17
Release date:2015-07-29
Identifier:4-nitrophenyl alpha-D-galactopyranoside
9QG
9QG
Name:methyl 3-O-[(1R)-1-carboxyethyl]-beta-D-galactopyranoside
Formula:C10 H18 O8
SMILES:O(C)C1OC(CO)C(C(C1O)OC(C(O)=O)C)O
InChi:InChI=1S/C10H18O8/c1-4(9(14)15)17-8-6(12)5(3-11)18-10(16-2)7(8)13/h4-8,10-13H,3H2,1-2H3,(H,14,15)/t4-,5-,6+,7-,8+,10-/m1/s1
Synonyms:methyl 3-O-[(1R)-1-carboxyethyl]-beta-D-galactoside
Definition date:2017-05-25
Last modified:2020-07-17
Release date:2018-05-23
Identifier:methyl 3-O-[(1R)-1-carboxyethyl]-beta-D-galactopyranoside
9QZ
9QZ
Name:[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-3,6-bis(oxidanyl)-4,5-disulfooxy-oxan-2-yl]methoxy ]-6-(hydroxymethyl)-3,5-disulfooxy-oxan-4-yl] hydrogen sulfate
Formula:C12 H22 O26 S5
SMILES:OC[CH]1O[CH](OC[CH]2O[CH](O)[CH](O[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]2O)[CH](O[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O[S](O)(=O)=O
InChi:InChI=1S/C12H22O26S5/c13-1-3-6(34-39(16,17)18)8(36-41(22,23)24)10(38-43(28,29)30)12(33-3)31-2-4-5(14)7(35-40(19,20)21)9(11(15)32-4)37-42(25,26)27/h3-15H,1-2H2,(H,16,17,18)(H,19,20,21)(H,22,23,24)(H,25,26,27)(H,28,29,30)/t3-,4+,5+,6-,7-,8-,9+,10+,11-,12-/m1/s1
Definition date:2017-06-30
Last modified:2020-07-17
Release date:2017-09-20
Identifier:[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-3,6-bis(oxidanyl)-4,5-disulfooxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)-3,5-disulfooxy-oxan-4-yl] hydrogen sulfate
9S7
9S7
Name:5-acetamido-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
Formula:C11 H18 F N O7
SMILES:O=C(O)C1C(F)C(C(C(O1)C(O)CCO)NC(=O)C)O
InChi:InChI=1S/C11H18FNO7/c1-4(15)13-7-8(17)6(12)10(11(18)19)20-9(7)5(16)2-3-14/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7-,8+,9+,10+/m1/s1
Synonyms:5-(acetylamino)-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:5-(acetylamino)-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
9SG
9SG
Name:(2R,3R,5R,6R)-5-acetamido-2,3-bis(fluoranyl)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid
Formula:C11 H17 F2 N O7
SMILES:O=C(C)NC1C(C(C(CO)O)O)OC(C(C1)F)(F)C(=O)O
InChi:InChI=1S/C11H17F2NO7/c1-4(16)14-5-2-7(12)11(13,10(19)20)21-9(5)8(18)6(17)3-15/h5-9,15,17-18H,2-3H2,1H3,(H,14,16)(H,19,20)/t5-,6-,7-,8-,9-,11-/m1/s1
Synonyms:(2~{R},3~{R},5~{R},6~{R})-5-acetamido-2,3-bis(fluoranyl)-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:(2R,3R,5R,6R)-5-(acetylamino)-2,3-difluoro-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)
9SJ
9SJ
Name:5-acetamido-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
Formula:C11 H18 F N O7
SMILES:O=C(C)NC1C(O)C(F)C(OC1CC(CO)O)C(=O)O
InChi:InChI=1S/C11H18FNO7/c1-4(15)13-8-6(2-5(16)3-14)20-10(11(18)19)7(12)9(8)17/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7+,8-,9-,10-/m0/s1
Synonyms:5-(acetylamino)-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:5-(acetylamino)-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
9SM
9SM
Name:(2R,3R,4R,5R,6S)-5-acetamido-6-[(2S)-2,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-carboxylic acid
Formula:C11 H17 F2 N O7
SMILES:OC(C1(OC(CC(CO)O)C(C(C1F)O)NC(=O)C)F)=O
InChi:InChI=1S/C11H17F2NO7/c1-4(16)14-7-6(2-5(17)3-15)21-11(13,10(19)20)9(12)8(7)18/h5-9,15,17-18H,2-3H2,1H3,(H,14,16)(H,19,20)/t5-,6-,7-,8+,9+,11+/m0/s1
Synonyms:(2~{R},3~{R},4~{R},5~{R},6~{S})-5-acetamido-6-[(2~{S})-2,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c arboxylic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:(2R,3R,4R,5R,6S)-5-(acetylamino)-6-[(2S)-2,3-dihydroxypropyl]-2,3-difluoro-4-hydroxytetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)
9SP
9SP
Name:(2R,3R,4R,5R,6R)-5-acetamido-6-[(1R)-1,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-carboxylic acid
Formula:C11 H17 F2 N O7
SMILES:OC(C1(OC(C(O)CCO)C(C(C1F)O)NC(=O)C)F)=O
InChi:InChI=1S/C11H17F2NO7/c1-4(16)14-6-7(18)9(12)11(13,10(19)20)21-8(6)5(17)2-3-15/h5-9,15,17-18H,2-3H2,1H3,(H,14,16)(H,19,20)/t5-,6-,7-,8+,9-,11-/m1/s1
Synonyms:(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-6-[(1~{R})-1,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c arboxylic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:(2R,3R,4R,5R,6R)-5-(acetylamino)-6-[(1R)-1,3-dihydroxypropyl]-2,3-difluoro-4-hydroxytetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)
N1L
N1L
Name:2-amino-2-deoxy-beta-D-glucopyranuronic acid
Formula:C6 H11 N O6
SMILES:O=C(O)C1OC(O)C(N)C(O)C1O
InChi:InChI=1S/C6H11NO6/c7-1-2(8)3(9)4(5(10)11)13-6(1)12/h1-4,6,8-9,12H,7H2,(H,10,11)/t1-,2-,3+,4+,6-/m1/s1
Synonyms:2-amino-2-deoxy-beta-D-glucuronic acid
Definition date:2008-03-11
Last modified:2020-07-17
Identifier:2-amino-2-deoxy-beta-D-glucopyranuronic acid
9T1
9T1
Name:5-acetamido-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid
Formula:C11 H16 F N O7
SMILES:O=C(C)NC1C(=O)C(F)C(OC1C(C(C)O)O)C(=O)O
InChi:InChI=1S/C11H16FNO7/c1-3(14)7(16)10-6(13-4(2)15)8(17)5(12)9(20-10)11(18)19/h3,5-7,9-10,14,16H,1-2H3,(H,13,15)(H,18,19)/t3-,5-,6-,7-,9+,10-/m1/s1
Synonyms:5-(acetylamino)-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:5-(acetylamino)-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid
9T7
9T7
Name:(2R,3R,4R,5R,6R)-5-acetamido-6-[(1R,2R)-1,2-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-carboxylic acid
Formula:C11 H17 F2 N O7
SMILES:OC(C1(OC(C(C(C)O)O)C(C(C1F)O)NC(=O)C)F)=O
InChi:InChI=1S/C11H17F2NO7/c1-3(15)6(17)8-5(14-4(2)16)7(18)9(12)11(13,21-8)10(19)20/h3,5-9,15,17-18H,1-2H3,(H,14,16)(H,19,20)/t3-,5-,6-,7-,8-,9-,11-/m1/s1
Synonyms:(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-1,2-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxa ne-2-carboxylic acid
Definition date:2017-06-07
Last modified:2020-07-17
Release date:2018-02-21
Identifier:(2R,3R,4R,5R,6R)-5-(acetylamino)-6-[(1R,2R)-1,2-dihydroxypropyl]-2,3-difluoro-4-hydroxytetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)
9VP
9VP
Name:5-acetamido-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid
Formula:C11 H18 F N O7
SMILES:OC(=O)C1C(F)CC(C(O1)C(O)C(CO)O)NC(=O)C
InChi:InChI=1S/C11H18FNO7/c1-4(15)13-6-2-5(12)9(11(18)19)20-10(6)8(17)7(16)3-14/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7-,8-,9+,10-/m1/s1
Synonyms:5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid
Definition date:2017-06-15
Last modified:2020-07-17
Release date:2018-02-21
Identifier:5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid
9WJ
9WJ
Name:4-acetamido-4,6-dideoxy-beta-D-mannopyranose
Formula:C8 H15 N O5
SMILES:OC1C(C(OC(C1NC(=O)C)C)O)O
InChi:InChI=1S/C8H15NO5/c1-3-5(9-4(2)10)6(11)7(12)8(13)14-3/h3,5-8,11-13H,1-2H3,(H,9,10)/t3-,5-,6+,7+,8-/m1/s1
Synonyms:4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose
Definition date:2017-06-19
Last modified:2020-07-17
Release date:2018-10-24
Identifier:4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose
9WN
9WN
Name:(2R)-2-(alpha-D-glucopyranosyloxy)-3-hydroxypropanoic acid
Formula:C9 H16 O9
SMILES:OC[CH]1O[CH](O[CH](CO)C(O)=O)[CH](O)[CH](O)[CH]1O
InChi:InChI=1S/C9H16O9/c10-1-3-5(12)6(13)7(14)9(17-3)18-4(2-11)8(15)16/h3-7,9-14H,1-2H2,(H,15,16)/t3-,4-,5-,6+,7-,9-/m1/s1
Synonyms:(2~{R})-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-propanoic acid
Definition date:2017-07-20
Last modified:2020-07-17
Release date:2018-08-08
Identifier:(2~{R})-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-propanoic acid
9WZ
9WZ
Name:2-hydroxy-4-(2-hydroxyethyl)phenyl beta-D-fructofuranoside
Formula:C14 H20 O8
SMILES:OCCc1ccc(O[C]2(CO)O[CH](CO)[CH](O)[CH]2O)c(O)c1
InChi:InChI=1S/C14H20O8/c15-4-3-8-1-2-10(9(18)5-8)21-14(7-17)13(20)12(19)11(6-16)22-14/h1-2,5,11-13,15-20H,3-4,6-7H2/t11-,12-,13+,14-/m1/s1
Synonyms:(2~{S},3~{S},4~{S},5~{R})-2-[4-(2-hydroxyethyl)-2-oxidanyl-phenoxy]-2,5-bis(hydroxymethyl)oxolane-3,4-diol
Definition date:2017-07-21
Last modified:2020-07-17
Release date:2018-11-28
Identifier:(2~{S},3~{S},4~{S},5~{R})-2-[4-(2-hydroxyethyl)-2-oxidanyl-phenoxy]-2,5-bis(hydroxymethyl)oxolane-3,4-diol

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon