Chemie Search results for query - Protein Data Bank Japan

English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

PDB Info pages Status search Chemie search: 901 results BIRD

5N6

5N6
Name:	9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid
Formula:	C13 H21 N O10
SMILES:	CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)COC(C)=O)C(O)=O
InChi:	InChI=1S/C13H21NO10/c1-5(15)14-9-7(17)3-13(22,12(20)21)24-11(9)10(19)8(18)4-23-6(2)16/h7-11,17-19,22H,3-4H2,1-2H3,(H,14,15)(H,20,21)/t7-,8+,9+,10+,11+,13+/m0/s1
Synonyms:	(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-ca rboxylic acid
Definition date:	2015-10-27
Last modified:	2020-07-17
Release date:	2016-03-23
Identifier:	(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-ca rboxylic acid

5QP

5QP
Name:	(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl alpha-D-glucopyranoside
Formula:	C13 H24 O10
SMILES:	OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)C[CH](O)[CH]2CO)[CH](O)[CH](O)[CH]1O
InChi:	InChI=1S/C13H24O10/c14-2-4-5(16)1-6(17)8(18)12(4)23-13-11(21)10(20)9(19)7(3-15)22-13/h4-21H,1-3H2/t4-,5+,6-,7+,8+,9+,10-,11+,12+,13+/m0/s1
Synonyms:	(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(1~{R},2~{S},3~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5,6-tris(oxida nyl)cyclohexyl]oxy-oxane-3,4,5-triol
Definition date:	2015-11-10
Last modified:	2020-07-17
Release date:	2016-07-06
Identifier:	(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(1~{R},2~{S},3~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5,6-tris(oxida nyl)cyclohexyl]oxy-oxane-3,4,5-triol

5TH

5TH
Name:	[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate
Formula:	C6 H12 O10 S2
SMILES:	OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O)[CH]1OSO
InChi:	InChI=1S/C6H12O10S2/c7-1-2-4(15-17-10)3(8)5(6(9)14-2)16-18(11,12)13/h2-10H,1H2,(H,11,12,13)/t2-,3+,4-,5-,6+/m1/s1
Synonyms:	[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate
Definition date:	2015-11-28
Last modified:	2020-07-17
Release date:	2016-11-02
Identifier:	[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate

5TJ

5TJ
Name:	[(2R,3R,4R,5R,6S)-2-(hydroxymethyl)-5,6-bis(oxidanyl)-3-oxidanylsulfanyloxy-oxan-4-yl] hydrogen sulfate
Formula:	C6 H12 O10 S2
SMILES:	OC[CH]1O[CH](O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1OSO
InChi:	InChI=1S/C6H12O10S2/c7-1-2-4(15-17-10)5(16-18(11,12)13)3(8)6(9)14-2/h2-10H,1H2,(H,11,12,13)/t2-,3-,4-,5-,6+/m1/s1
Synonyms:	[(2~{R},3~{R},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-5,6-bis(oxidanyl)-3-oxidanylsulfanyloxy-oxan-4-yl] hydrogen sulfate
Definition date:	2015-11-28
Last modified:	2020-07-17
Release date:	2016-11-02
Identifier:	[(2~{R},3~{R},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-5,6-bis(oxidanyl)-3-oxidanylsulfanyloxy-oxan-4-yl] hydrogen sulfate

5TK

5TK
Name:	(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol
Formula:	C6 H12 O7 S
SMILES:	OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1OSO
InChi:	InChI=1S/C6H12O7S/c7-1-2-5(13-14-11)3(8)4(9)6(10)12-2/h2-11H,1H2/t2-,3-,4-,5-,6+/m1/s1
Synonyms:	(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol
Definition date:	2015-11-28
Last modified:	2020-07-17
Release date:	2016-11-02
Identifier:	(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol

5TM

5TM
Name:	[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate
Formula:	C6 H12 O10 S2
SMILES:	OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](OSO)[CH]1O
InChi:	InChI=1S/C6H12O10S2/c7-1-2-3(8)4(15-17-10)5(6(9)14-2)16-18(11,12)13/h2-10H,1H2,(H,11,12,13)/t2-,3-,4+,5-,6+/m1/s1
Synonyms:	[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate
Definition date:	2015-11-28
Last modified:	2020-07-17
Release date:	2016-11-02
Identifier:	[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate

GNS

GNS
Name:	2-deoxy-2-(sulfoamino)-alpha-D-glucopyranose
Formula:	C6 H13 N O8 S
SMILES:	O=S(=O)(O)NC1C(O)C(O)C(OC1O)CO
InChi:	InChI=1S/C6H13NO8S/c8-1-2-4(9)5(10)3(6(11)15-2)7-16(12,13)14/h2-11H,1H2,(H,12,13,14)/t2-,3-,4-,5-,6+/m1/s1
Synonyms:	N-SULFO-ALPHA-D-GLUCOSAMINE
Definition date:	2005-10-31
Last modified:	2020-07-17
Identifier:	2-deoxy-2-(sulfoamino)-alpha-D-glucopyranose

GNX

GNX
Name:	2-deoxy-3-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
Formula:	C6 H13 N O11 S2
SMILES:	O=S(=O)(O)OC1C(O)C(OC(O)C1NS(=O)(=O)O)CO
InChi:	InChI=1S/C6H13NO11S2/c8-1-2-4(9)5(18-20(14,15)16)3(6(10)17-2)7-19(11,12)13/h2-10H,1H2,(H,11,12,13)(H,14,15,16)/t2-,3-,4-,5-,6+/m1/s1
Synonyms:	2-deoxy-3-O-sulfo-2-(sulfoamino)-alpha-D-glucose
Definition date:	2011-11-03
Last modified:	2020-07-17
Release date:	2012-11-23
Identifier:	2-deoxy-3-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose

GP0

GP0
Name:	5-fluoro-1-[3-C-(hydroxymethyl)-beta-D-glucopyranosyl]pyrimidine-2,4(1H,3H)-dione
Formula:	C11 H15 F N2 O8
SMILES:	FC1=CN(C(=O)NC1=O)C2OC(C(O)C(O)(C2O)CO)CO
InChi:	InChI=1S/C11H15FN2O8/c12-4-1-14(10(20)13-8(4)19)9-7(18)11(21,3-16)6(17)5(2-15)22-9/h1,5-7,9,15-18,21H,2-3H2,(H,13,19,20)/t5-,6-,7+,9-,11+/m1/s1
Synonyms:	5-fluoro-1-[3-C-(hydroxymethyl)-beta-D-glucosyl]pyrimidine-2,4(1H,3H)-dione
Definition date:	2011-08-10
Last modified:	2020-07-17
Identifier:	5-fluoro-1-[3-C-(hydroxymethyl)-beta-D-glucopyranosyl]pyrimidine-2,4(1H,3H)-dione

GP1

GP1
Name:	2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose
Formula:	C6 H14 N O8 P
SMILES:	O=P(OC1OC(C(O)C(O)C1N)CO)(O)O
InChi:	InChI=1S/C6H14NO8P/c7-3-5(10)4(9)2(1-8)14-6(3)15-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6-/m1/s1
Synonyms:	GLUCOSAMINE 1-PHOSPHATE
Definition date:	1999-09-30
Last modified:	2020-07-17
Identifier:	2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose

GP4

GP4
Name:	2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose
Formula:	C6 H14 N O8 P
SMILES:	O=P(O)(O)OC1C(OC(O)C(N)C1O)CO
InChi:	InChI=1S/C6H14NO8P/c7-3-4(9)5(15-16(11,12)13)2(1-8)14-6(3)10/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6+/m1/s1
Synonyms:	GLUCOSAMINE 4-PHOSPHATE
Definition date:	1999-09-30
Last modified:	2020-07-17
Identifier:	2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose

GPH

GPH
Name:	4-O-phosphono-D-glycero-beta-D-manno-heptopyranose
Formula:	C7 H15 O10 P
SMILES:	O=P(O)(O)OC1C(OC(O)C(O)C1O)C(O)CO
InChi:	InChI=1S/C7H15O10P/c8-1-2(9)5-6(17-18(13,14)15)3(10)4(11)7(12)16-5/h2-12H,1H2,(H2,13,14,15)/t2-,3-,4+,5-,6+,7-/m1/s1
Synonyms:	4-O-phosphono-D-glycero-beta-D-manno-heptose
Definition date:	2000-05-24
Last modified:	2020-07-17
Identifier:	4-O-phosphono-D-glycero-beta-D-manno-heptopyranose

GPK

GPK
Name:	5-fluoro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione
Formula:	C10 H13 F N2 O7
SMILES:	FC1=CN(C(=O)NC1=O)C2OC(C(O)C(O)C2O)CO
InChi:	InChI=1S/C10H13FN2O7/c11-3-1-13(10(19)12-8(3)18)9-7(17)6(16)5(15)4(2-14)20-9/h1,4-7,9,14-17H,2H2,(H,12,18,19)/t4-,5-,6+,7-,9-/m1/s1
Synonyms:	5-fluoro-1-(beta-D-glucosyl)pyrimidine-2,4(1H,3H)-dione
Definition date:	2011-08-10
Last modified:	2020-07-17
Identifier:	5-fluoro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione

GPM

GPM
Name:	(1S)-1,5-anhydro-1-(phosphonomethyl)-D-glucitol
Formula:	C7 H15 O8 P
SMILES:	O=P(O)(O)CC1OC(C(O)C(O)C1O)CO
InChi:	InChI=1S/C7H15O8P/c8-1-3-5(9)7(11)6(10)4(15-3)2-16(12,13)14/h3-11H,1-2H2,(H2,12,13,14)/t3-,4-,5-,6+,7+/m1/s1
Synonyms:	GLUCOPYRANOSYL-1-METHYL-PHOSPHONIC ACID
Definition date:	1999-07-08
Last modified:	2020-07-17
Identifier:	(1S)-1,5-anhydro-1-(phosphonomethyl)-D-glucitol

GPQ

GPQ
Name:	5-chloro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione
Formula:	C10 H13 Cl N2 O7
SMILES:	ClC1=CN(C(=O)NC1=O)C2OC(C(O)C(O)C2O)CO
InChi:	InChI=1S/C10H13ClN2O7/c11-3-1-13(10(19)12-8(3)18)9-7(17)6(16)5(15)4(2-14)20-9/h1,4-7,9,14-17H,2H2,(H,12,18,19)/t4-,5-,6+,7-,9-/m1/s1
Synonyms:	5-chloro-1-(beta-D-glucosyl)pyrimidine-2,4(1H,3H)-dione
Definition date:	2011-08-10
Last modified:	2020-07-17
Identifier:	5-chloro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione

GPU

GPU
Name:	5-bromo-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione
Formula:	C10 H13 Br N2 O7
SMILES:	BrC1=CN(C(=O)NC1=O)C2OC(C(O)C(O)C2O)CO
InChi:	InChI=1S/C10H13BrN2O7/c11-3-1-13(10(19)12-8(3)18)9-7(17)6(16)5(15)4(2-14)20-9/h1,4-7,9,14-17H,2H2,(H,12,18,19)/t4-,5-,6+,7-,9-/m1/s1
Synonyms:	5-bromo-1-(beta-D-glucosyl)pyrimidine-2,4(1H,3H)-dione
Definition date:	2011-08-10
Last modified:	2020-07-17
Identifier:	5-bromo-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione

GPV

GPV
Name:	1-(beta-D-glucopyranosyl)-5-iodopyrimidine-2,4(1H,3H)-dione
Formula:	C10 H13 I N2 O7
SMILES:	IC1=CN(C(=O)NC1=O)C2OC(C(O)C(O)C2O)CO
InChi:	InChI=1S/C10H13IN2O7/c11-3-1-13(10(19)12-8(3)18)9-7(17)6(16)5(15)4(2-14)20-9/h1,4-7,9,14-17H,2H2,(H,12,18,19)/t4-,5-,6+,7-,9-/m1/s1
Synonyms:	1-(beta-D-glucosyl)-5-iodopyrimidine-2,4(1H,3H)-dione
Definition date:	2011-08-10
Last modified:	2020-07-17
Identifier:	1-(beta-D-glucopyranosyl)-5-iodopyrimidine-2,4(1H,3H)-dione

GPW

GPW
Name:	1-(beta-D-glucopyranosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione
Formula:	C11 H13 F3 N2 O7
SMILES:	FC(F)(F)C1=CN(C(=O)NC1=O)C2OC(C(O)C(O)C2O)CO
InChi:	InChI=1S/C11H13F3N2O7/c12-11(13,14)3-1-16(10(22)15-8(3)21)9-7(20)6(19)5(18)4(2-17)23-9/h1,4-7,9,17-20H,2H2,(H,15,21,22)/t4-,5-,6+,7-,9-/m1/s1
Synonyms:	1-(beta-D-glucosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione
Definition date:	2011-08-10
Last modified:	2020-07-17
Identifier:	1-(beta-D-glucopyranosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione

GQ1

GQ1
Name:	4-O-sulfo-alpha-D-glucopyranose
Formula:	C6 H12 O9 S
SMILES:	O=S(=O)(O)OC1C(OC(O)C(O)C1O)CO
InChi:	InChI=1S/C6H12O9S/c7-1-2-5(15-16(11,12)13)3(8)4(9)6(10)14-2/h2-10H,1H2,(H,11,12,13)/t2-,3-,4-,5-,6+/m1/s1
Synonyms:	4-O-sulfo-alpha-D-glucose
Definition date:	2014-02-21
Last modified:	2020-07-17
Release date:	2014-10-15
Identifier:	4-O-sulfo-alpha-D-glucopyranose

GRF

GRF
Name:	5-O-phosphono-beta-D-ribofuranosylamine
Formula:	C5 H12 N O7 P
SMILES:	O=P(O)(O)OCC1OC(N)C(O)C1O
InChi:	InChI=1S/C5H12NO7P/c6-5-4(8)3(7)2(13-5)1-12-14(9,10)11/h2-5,7-8H,1,6H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1
Synonyms:	5-O-phosphono-beta-D-ribosylamine
Definition date:	2005-06-16
Last modified:	2020-07-17
Identifier:	5-O-phosphono-beta-D-ribofuranosylamine

GRX

GRX
Name:	(1R)-1,5-anhydro-1-[(S)-fluoro(phosphono)methyl]-D-glucitol
Formula:	C7 H14 F O8 P
SMILES:	O=P(O)(O)C(F)C1OC(C(O)C(O)C1O)CO
InChi:	InChI=1S/C7H14FO8P/c8-7(17(13,14)15)6-5(12)4(11)3(10)2(1-9)16-6/h2-7,9-12H,1H2,(H2,13,14,15)/t2-,3-,4+,5-,6-,7+/m1/s1
Synonyms:	(S)-1-beta-phosphonofluoromethylene-1-deoxy-D-glucopyranose
Definition date:	2013-09-09
Last modified:	2020-07-17
Release date:	2014-07-16
Identifier:	(1R)-1,5-anhydro-1-[(S)-fluoro(phosphono)methyl]-D-glucitol

GS1

GS1
Name:	1-thio-beta-D-glucopyranose
Formula:	C6 H12 O5 S
SMILES:	OC1C(O)C(OC(S)C1O)CO
InChi:	InChI=1S/C6H12O5S/c7-1-2-3(8)4(9)5(10)6(12)11-2/h2-10,12H,1H2/t2-,3-,4+,5-,6+/m1/s1
Synonyms:	1-thio-beta-D-glucose
Definition date:	2001-11-26
Last modified:	2020-07-17
Identifier:	1-thio-beta-D-glucopyranose

GS9

GS9
Name:	naphthalen-2-yl 1-thio-beta-D-galactopyranoside
Formula:	C16 H18 O5 S
SMILES:	S(c1ccc2c(c1)cccc2)C3OC(C(O)C(O)C3O)CO
InChi:	InChI=1S/C16H18O5S/c17-8-12-13(18)14(19)15(20)16(21-12)22-11-6-5-9-3-1-2-4-10(9)7-11/h1-7,12-20H,8H2/t12-,13+,14+,15-,16+/m1/s1
Synonyms:	naphthalen-2-yl 1-thio-beta-D-galactoside
Definition date:	2011-11-08
Last modified:	2020-07-17
Release date:	2012-10-12
Identifier:	naphthalen-2-yl 1-thio-beta-D-galactopyranoside

GTK

GTK
Name:	beta-D-galactofuranuronic acid
Formula:	C6 H10 O7
SMILES:	O=C(O)C(O)C1OC(O)C(O)C1O
InChi:	InChI=1S/C6H10O7/c7-1-2(8)6(12)13-4(1)3(9)5(10)11/h1-4,6-9,12H,(H,10,11)/t1-,2-,3+,4-,6-/m1/s1
Synonyms:	beta-D-galacturonic acid
Definition date:	2011-08-15
Last modified:	2020-07-17
Identifier:	beta-D-galactofuranuronic acid

GTM

GTM
Name:	methyl 4-thio-beta-D-glucopyranoside
Formula:	C7 H14 O5 S
SMILES:	OC1C(O)C(S)C(OC1OC)CO
InChi:	InChI=1S/C7H14O5S/c1-11-7-5(10)4(9)6(13)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5-,6-,7-/m1/s1
Synonyms:	O1-METHYL-4-DEOXY-4-THIO-BETA-D-GLUCOSE
Definition date:	2003-02-07
Last modified:	2020-07-17
Identifier:	methyl 4-thio-beta-D-glucopyranoside

<22 23 24 25 26 27 28 29 30 313233 34 35 36 37 >

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon