Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
5KV
5KV
Name:2-deoxy-6-O-sulfo-2-(sulfoamino)-beta-D-glucopyranose
Formula:C6 H13 N O11 S2
SMILES:OC1C(C(C(OC1COS(=O)(O)=O)O)NS(O)(=O)=O)O
InChi:InChI=1S/C6H13NO11S2/c8-4-2(1-17-20(14,15)16)18-6(10)3(5(4)9)7-19(11,12)13/h2-10H,1H2,(H,11,12,13)(H,14,15,16)/t2-,3-,4-,5-,6-/m1/s1
Synonyms:6-O-sulfo-N-sulfo-beta-D-glucosamine
Definition date:2015-10-15
Last modified:2020-07-17
Release date:2015-11-18
Identifier:2-deoxy-6-O-sulfo-2-(sulfoamino)-beta-D-glucopyranose
5L2
5L2
Name:methyl (2S,4R)-1-[(2S,3R,4R,5S,6S)-6-(acetyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfonyl-4-sulfamoyloxy-pyrrolidine-2-carb oxylate
Formula:C14 H24 N2 O13 S2
SMILES:C1(C(C(C(C(COC(=O)C)O1)O)O)O)S(=O)(=O)N2CC(OS(=O)(=O)N)CC2C(=O)OC
InChi:InChI=1S/C14H24N2O13S2/c1-6(17)27-5-9-10(18)11(19)12(20)14(28-9)30(22,23)16-4-7(29-31(15,24)25)3-8(16)13(21)26-2/h7-12,14,18-20H,3-5H2,1-2H3,(H2,15,24,25)/t7-,8+,9+,10-,11-,12-,14+/m1/s1
Definition date:2015-10-16
Last modified:2020-07-17
Release date:2015-10-28
Identifier:methyl (2S,4R)-1-({(2S,3R,4R,5S,6S)-6-[(acetyloxy)methyl]-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl}sulfonyl)-4-(sulfamoyloxy)py rrolidine-2-carboxylate (non-preferred name)
5L3
5L3
Name:(6R)-5-O-acetyl-2,6-anhydro-6-{[4-(sulfamoyloxy)piperidin-1-yl]sulfonyl}-L-glucitol
Formula:C13 H24 N2 O11 S2
SMILES:C1(C(OC(C)=O)C(O)C(C(CO)O1)O)S(=O)(=O)N2CCC(CC2)OS(=O)(=O)N
InChi:InChI=1S/C13H24N2O11S2/c1-7(17)24-12-11(19)10(18)9(6-16)25-13(12)27(20,21)15-4-2-8(3-5-15)26-28(14,22)23/h8-13,16,18-19H,2-6H2,1H3,(H2,14,22,23)/t9-,10+,11-,12-,13-/m1/s1
Definition date:2015-10-16
Last modified:2020-07-17
Release date:2015-10-28
Identifier:(6R)-5-O-acetyl-2,6-anhydro-6-{[4-(sulfamoyloxy)piperidin-1-yl]sulfonyl}-L-glucitol
DPC
DPC
Name:5-ACETYLAMINO-4-AMINO-6-(PHENETHYL-PROPYL-CARBAMOYL)-5,6-DIHYDRO-4H-PYRAN-2-CARBOXYLIC ACID
Formula:C20 H27 N3 O5
SMILES:O=C(O)C=2OC(C(=O)N(CCc1ccccc1)CCC)C(NC(=O)C)C(N)C=2
InChi:InChI=1S/C20H27N3O5/c1-3-10-23(11-9-14-7-5-4-6-8-14)19(25)18-17(22-13(2)24)15(21)12-16(28-18)20(26)27/h4-8,12,15,17-18H,3,9-11,21H2,1-2H3,(H,22,24)(H,26,27)/t15-,17+,18+/m0/s1
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:(2R,3R,4S)-3-(acetylamino)-4-amino-2-[(2-phenylethyl)(propyl)carbamoyl]-3,4-dihydro-2H-pyran-6-carboxylic acid (non-preferred name)
5LS
5LS
Name:2,4-di-O-sulfo-alpha-D-glucopyranose
Formula:C6 H12 O12 S2
SMILES:OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O)[CH]1O[S](O)(=O)=O
InChi:InChI=1S/C6H12O12S2/c7-1-2-4(17-19(10,11)12)3(8)5(6(9)16-2)18-20(13,14)15/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3+,4-,5-,6+/m1/s1
Synonyms:[(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-4,6-bis(oxidanyl)-5-sulfooxy-oxan-3-yl] hydrogen sulfate
Definition date:2015-10-20
Last modified:2020-07-17
Release date:2016-11-02
Identifier:[(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-4,6-bis(oxidanyl)-5-sulfooxy-oxan-3-yl] hydrogen sulfate
5LT
5LT
Name:3,4-di-O-sulfo-alpha-D-glucopyranose
Formula:C6 H12 O12 S2
SMILES:C1(OC(C(C(C1O)OS(=O)(=O)O)OS(=O)(=O)O)CO)O
InChi:InChI=1S/C6H12O12S2/c7-1-2-4(17-19(10,11)12)5(18-20(13,14)15)3(8)6(9)16-2/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3-,4-,5-,6+/m1/s1
Definition date:2015-10-20
Last modified:2020-07-17
Release date:2020-07-29
Identifier:3,4-di-O-sulfo-alpha-D-glucopyranose
5N6
5N6
Name:9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid
Formula:C13 H21 N O10
SMILES:CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)COC(C)=O)C(O)=O
InChi:InChI=1S/C13H21NO10/c1-5(15)14-9-7(17)3-13(22,12(20)21)24-11(9)10(19)8(18)4-23-6(2)16/h7-11,17-19,22H,3-4H2,1-2H3,(H,14,15)(H,20,21)/t7-,8+,9+,10+,11+,13+/m0/s1
Synonyms:(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-ca rboxylic acid
Definition date:2015-10-27
Last modified:2020-07-17
Release date:2016-03-23
Identifier:(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-ca rboxylic acid
DRI
DRI
Name:2,6-dideoxy-4-O-methyl-beta-D-glucopyranose
Formula:C7 H14 O4
SMILES:O(C1C(OC(O)CC1O)C)C
InChi:InChI=1S/C7H14O4/c1-4-7(10-2)5(8)3-6(9)11-4/h4-9H,3H2,1-2H3/t4-,5-,6-,7-/m1/s1
Synonyms:4-O-METHYL-2,6-DIDEOXY-BETA-D-GLUCOSE
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:2,6-dideoxy-4-O-methyl-beta-D-arabino-hexopyranose
DSR
DSR
Name:2,6-dideoxy-4-thio-beta-D-allopyranose
Formula:C6 H12 O3 S
SMILES:SC1C(OC(O)CC1O)C
InChi:InChI=1S/C6H12O3S/c1-3-6(10)4(7)2-5(8)9-3/h3-8,10H,2H2,1H3/t3-,4+,5-,6-/m1/s1
Synonyms:2,6-dideoxy-4-thio-beta-D-allose
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:2,6-dideoxy-4-thio-beta-D-ribo-hexopyranose
DT6
DT6
Name:2,4-bisacetamido-2,4-dideoxy-beta-D-glucopyranose
Formula:C10 H18 N2 O6
SMILES:O=C(NC1C(OC(O)C(NC(=O)C)C1O)CO)C
InChi:InChI=1S/C10H18N2O6/c1-4(14)11-7-6(3-13)18-10(17)8(9(7)16)12-5(2)15/h6-10,13,16-17H,3H2,1-2H3,(H,11,14)(H,12,15)/t6-,7-,8-,9+,10-/m1/s1
Synonyms:2,4-bis(acetylamino)-2,4-dideoxy-beta-D-glucopyranose
Definition date:2006-06-29
Last modified:2020-07-17
Identifier:2,4-bis(acetylamino)-2,4-dideoxy-beta-D-glucopyranose
6K3
6K3
Name:heptyl 4-deoxy-4-fluoro-alpha-D-mannopyranoside
Formula:C13 H25 F O5
SMILES:CCCCCCCO[CH]1O[CH](CO)[CH](F)[CH](O)[CH]1O
InChi:InChI=1S/C13H25FO5/c1-2-3-4-5-6-7-18-13-12(17)11(16)10(14)9(8-15)19-13/h9-13,15-17H,2-8H2,1H3/t9-,10-,11+,12+,13+/m1/s1
Synonyms:4-Fluoro-Heptylmannoside
Definition date:2016-05-27
Last modified:2020-07-17
Release date:2017-06-21
Identifier:(2~{S},3~{S},4~{R},5~{S},6~{R})-5-fluoranyl-2-heptoxy-6-(hydroxymethyl)oxane-3,4-diol
6KH
6KH
Name:heptyl 3-fluoro-alpha-D-mannopyranoside
Formula:C13 H25 F O5
SMILES:CCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](F)[CH]1O
InChi:InChI=1S/C13H25FO5/c1-2-3-4-5-6-7-18-13-12(17)10(14)11(16)9(8-15)19-13/h9-13,15-17H,2-8H2,1H3/t9-,10+,11-,12+,13+/m1/s1
Synonyms:3-Fluoro-Heptylmannoside
Definition date:2016-05-27
Last modified:2020-07-17
Release date:2017-06-21
Identifier:(2~{S},3~{R},4~{S},5~{R},6~{R})-4-fluoranyl-2-heptoxy-6-(hydroxymethyl)oxane-3,5-diol
6KL
6KL
Name:methyl 4,5-bisacetamido-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
Formula:C14 H24 N2 O9
SMILES:C(O)(C1(OC)OC(C(C(C1)NC(C)=O)NC(C)=O)C(C(CO)O)O)=O
InChi:InChI=1S/C14H24N2O9/c1-6(18)15-8-4-14(24-3,13(22)23)25-12(10(8)16-7(2)19)11(21)9(20)5-17/h8-12,17,20-21H,4-5H2,1-3H3,(H,15,18)(H,16,19)(H,22,23)/t8-,9+,10+,11+,12+,14+/m0/s1
Synonyms:methyl 4,5-bis(acetylamino)-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
Definition date:2016-04-22
Last modified:2020-07-17
Release date:2016-05-11
Identifier:methyl 4,5-bis(acetylamino)-3,4,5-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
6KS
6KS
Name:heptyl 2-fluoro-alpha-D-mannopyranoside
Formula:C13 H25 F O5
SMILES:CCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1F
InChi:InChI=1S/C13H25FO5/c1-2-3-4-5-6-7-18-13-10(14)12(17)11(16)9(8-15)19-13/h9-13,15-17H,2-8H2,1H3/t9-,10+,11-,12-,13+/m1/s1
Synonyms:2-Fluoro-Heptylmannoside
Definition date:2016-05-27
Last modified:2020-07-17
Release date:2017-06-21
Identifier:(2~{R},3~{S},4~{S},5~{S},6~{S})-5-fluoranyl-6-heptoxy-2-(hydroxymethyl)oxane-3,4-diol
6KU
6KU
Name:heptyl 4-deoxy-4-deoxy-alpha-D-mannopyranoside
Formula:C13 H26 O5
SMILES:CCCCCCCO[CH]1O[CH](CO)C[CH](O)[CH]1O
InChi:InChI=1S/C13H26O5/c1-2-3-4-5-6-7-17-13-12(16)11(15)8-10(9-14)18-13/h10-16H,2-9H2,1H3/t10-,11-,12-,13-/m0/s1
Synonyms:4-Deoxy-Heptylmannoside
Definition date:2016-05-27
Last modified:2020-07-17
Release date:2017-06-21
Identifier:(2~{S},3~{S},4~{S},6~{S})-2-heptoxy-6-(hydroxymethyl)oxane-3,4-diol
6KW
6KW
Name:heptyl 3-deoxy-alpha-D-mannopyranoside
Formula:C13 H26 O5
SMILES:CCCCCCCO[CH]1O[CH](CO)[CH](O)C[CH]1O
InChi:InChI=1S/C13H26O5/c1-2-3-4-5-6-7-17-13-11(16)8-10(15)12(9-14)18-13/h10-16H,2-9H2,1H3/t10-,11-,12+,13-/m0/s1
Synonyms:3-Deoxy-Heptylmannoside
Definition date:2016-05-27
Last modified:2020-07-17
Release date:2017-06-21
Identifier:(2~{S},3~{S},5~{S},6~{R})-2-heptoxy-6-(hydroxymethyl)oxane-3,5-diol
DVC
DVC
Name:(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol
Formula:C7 H15 N O4
SMILES:OC1OC(C(O)(O)C(N)(C)C1)C
InChi:InChI=1S/C7H15NO4/c1-4-7(10,11)6(2,8)3-5(9)12-4/h4-5,9-11H,3,8H2,1-2H3/t4-,5+,6-/m0/s1
Definition date:2011-01-10
Last modified:2020-07-17
Identifier:(2R,4S,6S)-4-amino-4,6-dimethyldihydro-2H-pyran-2,5,5(6H)-triol (non-preferred name)
6LW
6LW
Name:(Z)-L-Arabinonhydroximo-1,4-lactone
Formula:C5 H9 N O5
SMILES:OC[CH]1OC(=NO)[CH](O)[CH]1O
InChi:InChI=1S/C5H9NO5/c7-1-2-3(8)4(9)5(6-10)11-2/h2-4,7-10H,1H2/b6-5-/t2-,3-,4+/m0/s1
Synonyms:(2~{Z},3~{R},4~{R},5~{S})-2-hydroxyimino-5-(hydroxymethyl)oxolane-3,4-diol
Definition date:2016-05-03
Last modified:2020-07-17
Release date:2016-08-10
Identifier:(2~{Z},3~{R},4~{R},5~{S})-2-hydroxyimino-5-(hydroxymethyl)oxolane-3,4-diol
6MJ
6MJ
Name:methyl beta-D-xylopyranoside
Formula:C6 H12 O5
SMILES:COC1OCC(C(C1O)O)O
InChi:InChI=1S/C6H12O5/c1-10-6-5(9)4(8)3(7)2-11-6/h3-9H,2H2,1H3/t3-,4+,5-,6-/m1/s1
Synonyms:methyl beta-D-xyloside
Definition date:2016-05-09
Last modified:2020-07-17
Release date:2017-05-24
Identifier:methyl beta-D-xylopyranoside
6MN
6MN
Name:2-amino-2-deoxy-6-O-phosphono-alpha-D-mannopyranose
Formula:C6 H14 N O8 P
SMILES:O=P(O)(O)OCC1OC(O)C(N)C(O)C1O
InChi:InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3+,4-,5-,6+/m1/s1
Synonyms:Mannosamine-6-phosphate
Definition date:2009-05-13
Last modified:2020-07-17
Identifier:2-amino-2-deoxy-6-O-phosphono-alpha-D-mannopyranose
DYM
DYM
Name:(2R)-2,3-dihydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid
Formula:C11 H17 N O8
SMILES:C(C1=CC(C(C(O1)OCC(CO)O)NC(C)=O)O)(=O)O
InChi:InChI=1S/C11H17NO8/c1-5(14)12-9-7(16)2-8(10(17)18)20-11(9)19-4-6(15)3-13/h2,6-7,9,11,13,15-16H,3-4H2,1H3,(H,12,14)(H,17,18)/t6-,7+,9-,11-/m1/s1
Synonyms:6-(2,3-DIHYDROXYPROPOXY)-5-ACETAMIDO-5,6-DIHYDRO-4-HYDROXY-4H-PYRAN-2-CARBOXYLIC ACID
Definition date:2005-11-28
Last modified:2020-07-17
Identifier:(2R)-2,3-dihydroxypropyl 2-(acetylamino)-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid
6PY
6PY
Name:5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-enon ic acid
Formula:C16 H27 N5 O9
SMILES:N(C1C(C(C(OC(NCCOC)=O)C(CO)O)OC(=C1)C(=O)O)NC(C)=O)/C(N)=N
InChi:InChI=1S/C16H27N5O9/c1-7(23)20-11-8(21-15(17)18)5-10(14(25)26)29-13(11)12(9(24)6-22)30-16(27)19-3-4-28-2/h5,8-9,11-13,22,24H,3-4,6H2,1-2H3,(H,19,27)(H,20,23)(H,25,26)(H4,17,18,21)/t8-,9+,11+,12+,13+/m0/s1
Synonyms:5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2- enonic acid
Definition date:2016-05-19
Last modified:2020-07-17
Release date:2016-06-29
Identifier:5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2- enonic acid
6PZ
6PZ
Name:5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid
Formula:C13 H22 N2 O8
SMILES:C[CH](O)[CH](NC(C)=O)[CH]1O[C](O)(C[CH](O)[CH]1NC(C)=O)C(O)=O
InChi:InChI=1S/C13H22N2O8/c1-5(16)9(14-6(2)17)11-10(15-7(3)18)8(19)4-13(22,23-11)12(20)21/h5,8-11,16,19,22H,4H2,1-3H3,(H,14,17)(H,15,18)(H,20,21)/t5-,8-,9-,10-,11-,13-/m0/s1
Synonyms:(2~{S},4~{S},5~{S},6~{S})-5-acetamido-6-[(1~{S},2~{S})-1-acetamido-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxyl ic acid
Definition date:2016-05-19
Last modified:2020-07-17
Release date:2017-03-08
Identifier:(2~{S},4~{S},5~{S},6~{S})-5-acetamido-6-[(1~{S},2~{S})-1-acetamido-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxyl ic acid
MN0
MN0
Name:methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
Formula:C12 H21 N O10
SMILES:O=C(O)C1(OC)OC(C(NC(=O)CO)C(O)C1)C(O)C(O)CO
InChi:InChI=1S/C12H21NO10/c1-22-12(11(20)21)2-5(16)8(13-7(18)4-15)10(23-12)9(19)6(17)3-14/h5-6,8-10,14-17,19H,2-4H2,1H3,(H,13,18)(H,20,21)/t5-,6+,8+,9+,10+,12+/m0/s1
Synonyms:methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid
Definition date:2011-07-21
Last modified:2020-07-17
Identifier:methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
MNA
MNA
Name:2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid
Formula:C12 H21 N O9
SMILES:O=C(O)C1(OC)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1
InChi:InChI=1S/C12H21NO9/c1-5(15)13-8-6(16)3-12(21-2,11(19)20)22-10(8)9(18)7(17)4-14/h6-10,14,16-18H,3-4H2,1-2H3,(H,13,15)(H,19,20)/t6-,7+,8+,9+,10+,12+/m0/s1
Synonyms:2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID
Definition date:1999-07-08
Last modified:2020-07-17
Identifier:methyl 5-(acetylamino)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon