Chemie Search results for query - Protein Data Bank Japan

English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

PDB Info pages Status search Chemie search: 898 results BIRD

ERE

ERE
Name:	4-epi-vancosamine
Formula:	C7 H15 N O3
SMILES:	OC1OC(C(O)C(N)(C)C1)C
InChi:	InChI=1S/C7H15NO3/c1-4-6(10)7(2,8)3-5(9)11-4/h4-6,9-10H,3,8H2,1-2H3/t4-,5+,6-,7-/m0/s1
Synonyms:	(1R,3S,4R,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose
Definition date:	2010-08-12
Last modified:	2020-07-17
Identifier:	3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose

ERI

ERI
Name:	3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
Formula:	C9 H16 O5
SMILES:	O=C(OC1C(OC(O)CC1(O)C)C)C
InChi:	InChI=1S/C9H16O5/c1-5-8(14-6(2)10)9(3,12)4-7(11)13-5/h5,7-8,11-12H,4H2,1-3H3/t5-,7+,8-,9-/m0/s1
Synonyms:	4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE
Definition date:	1999-07-08
Last modified:	2020-07-17
Identifier:	4-O-acetyl-2,6-dideoxy-3-C-methyl-alpha-L-arabino-hexopyranose

ETT

ETT
Name:	5-acetamido-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-(4-methylphenyl)prop-2-en-1-yl]-D-glycero-D-galacto-non-2-enonic acid
Formula:	C21 H27 N O8
SMILES:	O=C(O)C=1OC(C(O)C(O)CO)C(NC(=O)C)C(O)C=1CC=Cc2ccc(cc2)C
InChi:	InChI=1S/C21H27NO8/c1-11-6-8-13(9-7-11)4-3-5-14-17(26)16(22-12(2)24)20(18(27)15(25)10-23)30-19(14)21(28)29/h3-4,6-9,15-18,20,23,25-27H,5,10H2,1-2H3,(H,22,24)(H,28,29)/b4-3+/t15-,16-,17+,18-,20-/m1/s1
Synonyms:	5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-(4-methylphenyl)prop-2-en-1-yl]-D-glycero-D-galacto-non-2-enonic acid
Definition date:	2010-11-24
Last modified:	2020-07-17
Identifier:	5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-(4-methylphenyl)prop-2-en-1-yl]-D-glycero-D-galacto-non-2-enonic acid

6BG

6BG
Name:	6-bromo-6-deoxy-beta-D-glucopyranose
Formula:	C6 H11 Br O5
SMILES:	BrCC1OC(O)C(O)C(O)C1O
InChi:	InChI=1S/C6H11BrO5/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-6,8-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
Synonyms:	6-bromo-6-deoxy-beta-D-glucose
Definition date:	2012-08-08
Last modified:	2020-07-17
Release date:	2012-10-12
Identifier:	6-bromo-6-deoxy-beta-D-glucopyranose

6C2

6C2
Name:	methyl 2-acetamido-2-deoxy-beta-D-glucopyranosiduronic acid
Formula:	C9 H15 N O7
SMILES:	OC1C(OC(C(C1O)NC(=O)C)OC)C(O)=O
InChi:	InChI=1S/C9H15NO7/c1-3(11)10-4-5(12)6(13)7(8(14)15)17-9(4)16-2/h4-7,9,12-13H,1-2H3,(H,10,11)(H,14,15)/t4-,5-,6+,7+,9-/m1/s1
Synonyms:	methyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranosiduronic acid
Definition date:	2015-03-05
Last modified:	2020-07-17
Release date:	2016-04-06
Identifier:	methyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranosiduronic acid

LVO

LVO
Name:	5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid
Formula:	C21 H36 N4 O8
SMILES:	O=C(OCC(O)C(OC)C1OC(=CC(NC(=[N@H])N)C1NC(=O)C)C(=O)O)CCCCCCC
InChi:	InChI=1S/C21H36N4O8/c1-4-5-6-7-8-9-16(28)32-11-14(27)18(31-3)19-17(24-12(2)26)13(25-21(22)23)10-15(33-19)20(29)30/h10,13-14,17-19,27H,4-9,11H2,1-3H3,(H,24,26)(H,29,30)(H4,22,23,25)/t13-,14+,17+,18+,19+/m0/s1
Synonyms:	5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid
Definition date:	2011-09-07
Last modified:	2020-07-17
Identifier:	5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid

LVZ

LVZ
Name:	propan-2-yl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside
Formula:	C9 H19 N O11 S2
SMILES:	O=S(=O)(O)OCC1OC(OC(C)C)C(NS(=O)(=O)O)C(O)C1O
InChi:	InChI=1S/C9H19NO11S2/c1-4(2)20-9-6(10-22(13,14)15)8(12)7(11)5(21-9)3-19-23(16,17)18/h4-12H,3H2,1-2H3,(H,13,14,15)(H,16,17,18)/t5-,6-,7-,8-,9+/m1/s1
Synonyms:	propan-2-yl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucoside
Definition date:	2012-07-18
Last modified:	2020-07-17
Release date:	2013-07-31
Identifier:	propan-2-yl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside

LXB

LXB
Name:	2-acetamido-2-deoxy-beta-D-gulopyranose
Formula:	C8 H15 N O6
SMILES:	O=C(NC1C(O)C(O)C(OC1O)CO)C
InChi:	InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6+,7+,8-/m1/s1
Synonyms:	N-acetyl-beta-D-gulosamine
Definition date:	2008-07-23
Last modified:	2020-07-17
Identifier:	2-(acetylamino)-2-deoxy-beta-D-gulopyranose

LXC

LXC
Name:	beta-L-xylopyranose
Formula:	C5 H10 O5
SMILES:	OC1C(O)COC(O)C1O
InChi:	InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5-/m0/s1
Synonyms:	beta-L-xylose
Definition date:	2002-03-13
Last modified:	2020-07-17
Identifier:	beta-L-xylopyranose

LXZ

LXZ
Name:	2-acetamido-2-deoxy-alpha-D-idopyranose
Formula:	C8 H15 N O6
SMILES:	O=C(NC1C(O)C(O)C(OC1O)CO)C
InChi:	InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5+,6+,7+,8+/m1/s1
Synonyms:	N-acetyl-alpha-D-idosamine
Definition date:	2008-07-09
Last modified:	2020-07-17
Identifier:	2-(acetylamino)-2-deoxy-alpha-D-idopyranose

6GP

6GP
Name:	N-[methoxy(oxo)acetyl]-beta-D-glucopyranosylamine
Formula:	C9 H15 N O8
SMILES:	O=C(NC1OC(C(O)C(O)C1O)CO)C(=O)OC
InChi:	InChI=1S/C9H15NO8/c1-17-9(16)7(15)10-8-6(14)5(13)4(12)3(2-11)18-8/h3-6,8,11-14H,2H2,1H3,(H,10,15)/t3-,4-,5+,6-,8-/m1/s1
Synonyms:	METHYL-N-(BETA-D-GLUCOPYRANOSYL)OXAMATE
Definition date:	2006-01-25
Last modified:	2020-07-17
Identifier:	N-[methoxy(oxo)acetyl]-beta-D-glucopyranosylamine

6GR

6GR
Name:	2-(alpha-L-altropyranosyloxy)benzoic acid
Formula:	C13 H16 O8
SMILES:	C2(O)C(O)C(Oc1c(C(=O)O)cccc1)OC(C2O)CO
InChi:	InChI=1S/C13H16O8/c14-5-8-9(15)10(16)11(17)13(21-8)20-7-4-2-1-3-6(7)12(18)19/h1-4,8-11,13-17H,5H2,(H,18,19)/t8-,9-,10-,11+,13+/m0/s1
Synonyms:	2-(alpha-L-altrosyloxy)benzoic acid
Definition date:	2016-04-07
Last modified:	2020-07-17
Release date:	2019-10-09
Identifier:	2-(alpha-L-altropyranosyloxy)benzoic acid

LZ0

LZ0
Name:	[1-(2-oxoethyl)-1H-1,2,3-triazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside
Formula:	C11 H17 N3 O6
SMILES:	O=CCn1nncc1COC2OC(C(O)C(O)C2O)C
InChi:	InChI=1S/C11H17N3O6/c1-6-8(16)9(17)10(18)11(20-6)19-5-7-4-12-13-14(7)2-3-15/h3-4,6,8-11,16-18H,2,5H2,1H3/t6-,8+,9+,10-,11+/m0/s1
Synonyms:	[1-(2-oxoethyl)-1H-1,2,3-triazol-5-yl]methyl 6-deoxy-alpha-L-galactoside
Definition date:	2008-05-22
Last modified:	2020-07-17
Identifier:	[1-(2-oxoethyl)-1H-1,2,3-triazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside

M1P

M1P
Name:	1-O-phosphono-alpha-D-mannopyranose
Formula:	C6 H13 O9 P
SMILES:	O=P(OC1OC(C(O)C(O)C1O)CO)(O)O
InChi:	InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6-/m1/s1
Synonyms:	ALPHA-D-MANNOSE 1-PHOSPHATE
Definition date:	2003-05-22
Last modified:	2020-07-17
Identifier:	1-O-phosphono-alpha-D-mannopyranose

M2F

M2F
Name:	2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-mannopyranoside
Formula:	C12 H13 F N2 O9
SMILES:	[O-][N+](=O)c2ccc(OC1OC(C(O)C(O)C1F)CO)c([N+]([O-])=O)c2
InChi:	InChI=1S/C12H13FN2O9/c13-9-11(18)10(17)8(4-16)24-12(9)23-7-2-1-5(14(19)20)3-6(7)15(21)22/h1-3,8-12,16-18H,4H2/t8-,9+,10-,11-,12-/m1/s1
Synonyms:	2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-mannoside
Definition date:	2009-03-02
Last modified:	2020-07-17
Identifier:	2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-mannopyranoside

5DI

5DI
Name:	alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride
Formula:	C6 H9 F O5
SMILES:	O=C1C(O)C(O)C(F)(OC1)CO
InChi:	InChI=1S/C6H9FO5/c7-6(2-8)5(11)4(10)3(9)1-12-6/h4-5,8,10-11H,1-2H2/t4-,5+,6+/m1/s1
Synonyms:	2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE
Definition date:	2012-03-14
Last modified:	2020-07-17
Release date:	2013-03-27
Identifier:	alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride

M3N

M3N
Name:	4-(hydroxymethyl)-1-(alpha-D-mannopyranosyl)-1H-1,2,3-triazole
Formula:	C9 H15 N3 O6
SMILES:	n1nn(cc1CO)C2OC(C(O)C(O)C2O)CO
InChi:	InChI=1S/C9H15N3O6/c13-2-4-1-12(11-10-4)9-8(17)7(16)6(15)5(3-14)18-9/h1,5-9,13-17H,2-3H2/t5-,6-,7+,8+,9+/m1/s1
Synonyms:	4-(hydroxymethyl)-1-(alpha-D-mannosyl)-1H-1,2,3-triazole
Definition date:	2014-05-02
Last modified:	2020-07-17
Release date:	2014-12-17
Identifier:	4-(hydroxymethyl)-1-(alpha-D-mannopyranosyl)-1H-1,2,3-triazole

M55

M55
Name:	benzyl alpha-D-glucopyranuronate
Formula:	C13 H16 O7
SMILES:	O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(=O)OCc2ccccc2
InChi:	InChI=1S/C13H16O7/c14-8-9(15)11(20-12(17)10(8)16)13(18)19-6-7-4-2-1-3-5-7/h1-5,8-12,14-17H,6H2/t8-,9-,10+,11-,12-/m0/s1
Synonyms:	Benzyl D-glucuronoate
Definition date:	2019-10-03
Last modified:	2020-07-17
Release date:	2019-11-27
Identifier:	(phenylmethyl) (2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxane-2-carboxylate

5GF

5GF
Name:	5-fluoro-beta-D-glucopyranose
Formula:	C6 H11 F O6
SMILES:	FC1(OC(O)C(O)C(O)C1O)CO
InChi:	InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6-/m1/s1
Synonyms:	5-fluoro-beta-D-glucose
Definition date:	2012-09-09
Last modified:	2020-07-17
Release date:	2012-11-09
Identifier:	(2R,3R,4R,5S,6S)-6-fluoro-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol (non-preferred name)

M6D

M6D
Name:	6-O-phosphono-beta-D-mannopyranose
Formula:	C6 H13 O9 P
SMILES:	O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
InChi:	InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6-/m1/s1
Synonyms:	beta-D-mannose-6-phosphate
Definition date:	2007-11-21
Last modified:	2020-07-17
Identifier:	6-O-phosphono-beta-D-mannopyranose

M6P

M6P
Name:	6-O-phosphono-alpha-D-mannopyranose
Formula:	C6 H13 O9 P
SMILES:	O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
InChi:	InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6+/m1/s1
Synonyms:	ALPHA-D-MANNOSE-6-PHOSPHATE
Definition date:	1999-07-08
Last modified:	2020-07-17
Identifier:	6-O-phosphono-alpha-D-mannopyranose

M7B

M7B
Name:	7-O-phosphono-D-glycero-beta-D-manno-heptopyranose
Formula:	C7 H15 O10 P
SMILES:	O=P(O)(O)OCC(O)C1OC(O)C(O)C(O)C1O
InChi:	InChI=1S/C7H15O10P/c8-2(1-16-18(13,14)15)6-4(10)3(9)5(11)7(12)17-6/h2-12H,1H2,(H2,13,14,15)/t2-,3+,4+,5+,6-,7-/m1/s1
Synonyms:	7-O-phosphono-D-glycero-beta-D-manno-heptose
Definition date:	2012-04-04
Last modified:	2020-07-17
Release date:	2012-12-21
Identifier:	7-O-phosphono-D-glycero-beta-D-manno-heptopyranose

M7P

M7P
Name:	7-O-phosphono-D-glycero-alpha-D-manno-heptopyranose
Formula:	C7 H15 O10 P
SMILES:	O=P(O)(O)OCC(O)C1OC(O)C(O)C(O)C1O
InChi:	InChI=1S/C7H15O10P/c8-2(1-16-18(13,14)15)6-4(10)3(9)5(11)7(12)17-6/h2-12H,1H2,(H2,13,14,15)/t2-,3+,4+,5+,6-,7+/m1/s1
Synonyms:	D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE
Definition date:	2004-08-20
Last modified:	2020-07-17
Identifier:	7-O-phosphono-D-glycero-alpha-D-manno-heptopyranose

DO8

DO8
Name:	3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid
Formula:	C8 H15 O11 P
SMILES:	O=P(O)(O)OCC(O)C1OC(O)(C(=O)O)CC(O)C1O
InChi:	InChI=1S/C8H15O11P/c9-3-1-8(14,7(12)13)19-6(5(3)11)4(10)2-18-20(15,16)17/h3-6,9-11,14H,1-2H2,(H,12,13)(H2,15,16,17)/t3-,4-,5-,6-,8-/m1/s1
Synonyms:	3-DEOXY-D-MANNO-2-OCTULOSONATE-8-PHOSPHATE
Definition date:	2004-08-18
Last modified:	2020-07-17
Identifier:	3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid

5KQ

5KQ
Name:	(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic acid
Formula:	C13 H22 N2 O9
SMILES:	CC(=O)NC1C(OC(CC1O)(O)C(O)=O)C(O)C(CNC(=O)C)O
InChi:	InChI=1S/C13H22N2O9/c1-5(16)14-4-8(19)10(20)11-9(15-6(2)17)7(18)3-13(23,24-11)12(21)22/h7-11,18-20,23H,3-4H2,1-2H3,(H,14,16)(H,15,17)(H,21,22)/t7-,8-,9+,10-,11+,13+/m0/s1
Synonyms:	(6R)-5-(acetylamino)-6-[(1S,2S)-3-(acetylamino)-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic acid
Definition date:	2015-10-14
Last modified:	2020-07-17
Release date:	2016-03-23
Identifier:	(6R)-5-(acetylamino)-6-[(1S,2S)-3-(acetylamino)-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic acid

<19 20 21 22 23 24 252627 28 29 30 31 32 33 34 >

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon