Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
6B1
6B1
Name:(5,6-dichloro-1H-benzimidazol-2-yl)methanol
Formula:C8 H6 Cl2 N2 O
SMILES:c2(cc1nc(nc1cc2Cl)CO)Cl
InChi:InChI=1S/C8H6Cl2N2O/c9-4-1-6-7(2-5(4)10)12-8(3-13)11-6/h1-2,13H,3H2,(H,11,12)
Definition date:2016-02-26
Last modified:2017-02-17
Release date:2017-02-22
Identifier:(5,6-dichloro-1H-benzimidazol-2-yl)methanol
71N
71N
Name:2-(trifluoromethyl)-1H-benzimidazol-5-amine
Formula:C8 H6 F3 N3
SMILES:FC(F)(F)c2nc1c(cc(cc1)N)n2
InChi:InChI=1S/C8H6F3N3/c9-8(10,11)7-13-5-2-1-4(12)3-6(5)14-7/h1-3H,12H2,(H,13,14)
Definition date:2016-08-10
Last modified:2017-02-10
Release date:2017-02-15
Identifier:2-(trifluoromethyl)-1H-benzimidazol-5-amine
6VN
6VN
Name:2-[(4-propan-2-ylphenyl)amino]-1-[(1~{S},5~{S})-3,3,5-trimethylcyclohexyl]benzimidazole-5-carboxylic acid
Formula:C26 H33 N3 O2
SMILES:C[CH]1C[CH](CC(C)(C)C1)n2c(Nc3ccc(cc3)C(C)C)nc4cc(ccc24)C(O)=O
InChi:InChI=1S/C26H33N3O2/c1-16(2)18-6-9-20(10-7-18)27-25-28-22-13-19(24(30)31)8-11-23(22)29(25)21-12-17(3)14-26(4,5)15-21/h6-11,13,16-17,21H,12,14-15H2,1-5H3,(H,27,28)(H,30,31)/t17-,21+/m1/s1
Definition date:2016-07-07
Last modified:2017-02-03
Release date:2017-02-08
Identifier:2-[(4-propan-2-ylphenyl)amino]-1-[(1~{S},5~{S})-3,3,5-trimethylcyclohexyl]benzimidazole-5-carboxylic acid
7WA
7WA
Name:1H-benzimidazol-4-amine
Formula:C7 H7 N3
SMILES:c21c(cccc1N)ncn2
InChi:InChI=1S/C7H7N3/c8-5-2-1-3-6-7(5)10-4-9-6/h1-4H,8H2,(H,9,10)
Definition date:2016-12-08
Last modified:2017-01-26
Release date:2017-02-01
Identifier:1H-benzimidazol-4-amine
7U6
7U6
Name:2-piperazin-1-ylcarbonyl-1H-benzimidazole-4-carboxamide
Formula:C13 H15 N5 O2
SMILES:NC(=O)c1cccc2[nH]c(nc12)C(=O)N3CCNCC3
InChi:InChI=1S/C13H15N5O2/c14-11(19)8-2-1-3-9-10(8)17-12(16-9)13(20)18-6-4-15-5-7-18/h1-3,15H,4-7H2,(H2,14,19)(H,16,17)
Definition date:2016-12-12
Last modified:2017-01-20
Release date:2017-01-25
Identifier:2-piperazin-1-ylcarbonyl-1~{H}-benzimidazole-4-carboxamide
7U9
7U9
Name:2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide
Formula:C13 H15 N5 O2
SMILES:N[CH]1CCN(C1)C(=O)c2[nH]c3cccc(C(N)=O)c3n2
InChi:InChI=1S/C13H15N5O2/c14-7-4-5-18(6-7)13(20)12-16-9-3-1-2-8(11(15)19)10(9)17-12/h1-3,7H,4-6,14H2,(H2,15,19)(H,16,17)/t7-/m1/s1
Definition date:2016-12-12
Last modified:2017-01-20
Release date:2017-01-25
Identifier:2-[(3~{R})-3-azanylpyrrolidin-1-yl]carbonyl-1~{H}-benzimidazole-4-carboxamide
7GZ
7GZ
Name:4-[3-(1H-benzimidazol-2-yl)-1H-indazol-6-yl]-3-ethylphenol
Formula:C22 H18 N4 O
SMILES:c5c(ccc(c1ccc4c(c1)nnc4c3nc2ccccc2n3)c5CC)O
InChi:InChI=1S/C22H18N4O/c1-2-13-11-15(27)8-10-16(13)14-7-9-17-20(12-14)25-26-21(17)22-23-18-5-3-4-6-19(18)24-22/h3-12,27H,2H2,1H3,(H,23,24)(H,25,26)
Definition date:2016-10-24
Last modified:2017-01-06
Release date:2017-01-11
Identifier:4-[3-(1H-benzimidazol-2-yl)-1H-indazol-6-yl]-3-ethylphenol
7K1
7K1
Name:1-[(3~{R})-3-(1~{H}-benzimidazol-2-yl)morpholin-4-yl]-3-[2-(4-methyl-2-phenyl-phenyl)-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]propan-1-one
Formula:C34 H31 N5 O2
SMILES:Cc1ccc(c2[nH]c3ncccc3c2CCC(=O)N4CCOC[CH]4c5[nH]c6ccccc6n5)c(c1)c7ccccc7
InChi:InChI=1S/C34H31N5O2/c1-22-13-14-25(27(20-22)23-8-3-2-4-9-23)32-24(26-10-7-17-35-33(26)38-32)15-16-31(40)39-18-19-41-21-30(39)34-36-28-11-5-6-12-29(28)37-34/h2-14,17,20,30H,15-16,18-19,21H2,1H3,(H,35,38)(H,36,37)/t30-/m0/s1
Definition date:2016-11-03
Last modified:2017-01-06
Release date:2017-01-11
Identifier:1-[(3~{R})-3-(1~{H}-benzimidazol-2-yl)morpholin-4-yl]-3-[2-(4-methyl-2-phenyl-phenyl)-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]propan-1-one
7HQ
7HQ
Name:benzimidazol-1-ylmethanol
Formula:C8 H8 N2 O
SMILES:OCn1cnc2ccccc12
InChi:InChI=1S/C8H8N2O/c11-6-10-5-9-7-3-1-2-4-8(7)10/h1-5,11H,6H2
Definition date:2016-11-01
Last modified:2016-12-09
Release date:2016-12-14
Identifier:benzimidazol-1-ylmethanol
63B
63B
Name:methyl (6-{[6-(4-fluorophenyl)[1,2,4]triazolo[4,3-b]pyridazin-3-yl]sulfanyl}-1H-benzimidazol-2-yl)carbamate
Formula:C20 H14 F N7 O2 S
SMILES:n23c(ccc(c1ccc(F)cc1)n2)nnc3Sc4ccc5c(c4)nc(n5)NC(OC)=O
InChi:InChI=1S/C20H14FN7O2S/c1-30-20(29)24-18-22-15-7-6-13(10-16(15)23-18)31-19-26-25-17-9-8-14(27-28(17)19)11-2-4-12(21)5-3-11/h2-10H,1H3,(H2,22,23,24,29)
Definition date:2016-01-19
Last modified:2016-11-18
Release date:2016-11-23
Identifier:methyl (6-{[6-(4-fluorophenyl)[1,2,4]triazolo[4,3-b]pyridazin-3-yl]sulfanyl}-1H-benzimidazol-2-yl)carbamate
5AJ
5AJ
Name:5'-azido-8-[(2-{[2-(1H-benzimidazol-2-yl)ethyl]amino}-2-oxoethyl)sulfanyl]-5'-deoxyadenosine
Formula:C21 H23 N11 O4 S
SMILES:c1nc2c(c(n1)N)nc(n2C3OC(C/N=[N+]=[N-])C(O)C3O)SCC(NCCc5nc4ccccc4n5)=O
InChi:InChI=1S/C21H23N11O4S/c22-18-15-19(26-9-25-18)32(20-17(35)16(34)12(36-20)7-27-31-23)21(30-15)37-8-14(33)24-6-5-13-28-10-3-1-2-4-11(10)29-13/h1-4,9,12,16-17,20,34-35H,5-8H2,(H,24,33)(H,28,29)(H2,22,25,26)/t12-,16-,17-,20-/m1/s1
Definition date:2015-08-31
Last modified:2016-09-09
Release date:2016-09-14
Identifier:5'-azido-8-[(2-{[2-(1H-benzimidazol-2-yl)ethyl]amino}-2-oxoethyl)sulfanyl]-5'-deoxyadenosine
6RQ
6RQ
Name:5,6-dimethyl-1~{H}-benzimidazol-2-amine
Formula:C9 H11 N3
SMILES:Cc1cc2[nH]c(N)nc2cc1C
InChi:InChI=1S/C9H11N3/c1-5-3-7-8(4-6(5)2)12-9(10)11-7/h3-4H,1-2H3,(H3,10,11,12)
Definition date:2016-06-08
Last modified:2016-08-18
Release date:2016-08-23
Identifier:5,6-dimethyl-1~{H}-benzimidazol-2-amine
58C
58C
Name:cis-4-{[2-(1H-benzimidazol-5-ylamino)quinazolin-8-yl]oxy}cyclohexanol
Formula:C21 H21 N5 O2
SMILES:c12cccc(c1nc(nc2)Nc4ccc3c(ncn3)c4)OC5CCC(CC5)O
InChi:InChI=1S/C21H21N5O2/c27-15-5-7-16(8-6-15)28-19-3-1-2-13-11-22-21(26-20(13)19)25-14-4-9-17-18(10-14)24-12-23-17/h1-4,9-12,15-16,27H,5-8H2,(H,23,24)(H,22,25,26)/t15-,16+
Definition date:2015-08-20
Last modified:2016-08-12
Release date:2016-08-17
Identifier:cis-4-{[2-(1H-benzimidazol-5-ylamino)quinazolin-8-yl]oxy}cyclohexanol
56U
56U
Name:2-(difluoromethyl)-1H-benzimidazole
Formula:C8 H6 F2 N2
SMILES:c2c1c(nc(C(F)F)n1)ccc2
InChi:InChI=1S/C8H6F2N2/c9-7(10)8-11-5-3-1-2-4-6(5)12-8/h1-4,7H,(H,11,12)
Definition date:2015-08-06
Last modified:2016-07-29
Release date:2016-08-03
Identifier:2-(difluoromethyl)-1H-benzimidazole
56V
56V
Name:(3R)-2,3-dihydro[1,3]thiazolo[3,2-a]benzimidazol-3-ol
Formula:C9 H8 N2 O S
SMILES:c2c1nc3SCC(n3c1ccc2)O
InChi:InChI=1S/C9H8N2OS/c12-8-5-13-9-10-6-3-1-2-4-7(6)11(8)9/h1-4,8,12H,5H2/t8-/m1/s1
Definition date:2015-08-06
Last modified:2016-07-29
Release date:2016-08-03
Identifier:(3R)-2,3-dihydro[1,3]thiazolo[3,2-a]benzimidazol-3-ol
5X4
5X4
Name:~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide
Formula:C25 H27 F3 N4 O2
SMILES:CCC(=O)N1CCCC[CH](C1)n2c(NC(=O)c3cccc(c3)C(F)(F)F)nc4cccc(C)c24
InChi:InChI=1S/C25H27F3N4O2/c1-3-21(33)31-13-5-4-11-19(15-31)32-22-16(2)8-6-12-20(22)29-24(32)30-23(34)17-9-7-10-18(14-17)25(26,27)28/h6-10,12,14,19H,3-5,11,13,15H2,1-2H3,(H,29,30,34)/t19-/m1/s1
Definition date:2015-12-17
Last modified:2016-07-22
Release date:2016-07-27
Identifier:~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide
5XH
5XH
Name:~{N}-[1-[(3~{R})-1-[4-(dimethylamino)but-2-enoyl]azepan-3-yl]-7-methyl-benzimidazol-2-yl]-2-methyl-pyridine-4-carboxamide
Formula:C27 H34 N6 O2
SMILES:CN(C)CC=CC(=O)N1CCCC[CH](C1)n2c(NC(=O)c3ccnc(C)c3)nc4cccc(C)c24
InChi:InChI=1S/C27H34N6O2/c1-19-9-7-11-23-25(19)33(27(29-23)30-26(35)21-13-14-28-20(2)17-21)22-10-5-6-16-32(18-22)24(34)12-8-15-31(3)4/h7-9,11-14,17,22H,5-6,10,15-16,18H2,1-4H3,(H,29,30,35)/b12-8+/t22-/m1/s1
Definition date:2015-12-21
Last modified:2016-07-22
Release date:2016-07-27
Identifier:~{N}-[1-[(3~{R})-1-[4-(dimethylamino)but-2-enoyl]azepan-3-yl]-7-methyl-benzimidazol-2-yl]-2-methyl-pyridine-4-carboxamide
N91
N91
Name:N-(1-METHYLBENZIMIDAZOL-5-YL)ACETAMIDE
Formula:C10 H11 N3 O
SMILES:Cn1cnc2cc(NC(C)=O)ccc12
InChi:InChI=1S/C10H11N3O/c1-7(14)12-8-3-4-10-9(5-8)11-6-13(10)2/h3-6H,1-2H3,(H,12,14)
Definition date:2016-01-06
Last modified:2016-07-15
Release date:2016-07-20
Identifier:N-(1-methylbenzimidazol-5-yl)ethanamide
4QV
4QV
Name:5-hydroxy-1'H-1,2'-bibenzimidazol-2(3H)-one
Formula:C14 H10 N4 O2
SMILES:O=C1N(c2c(N1)cc(cc2)O)c4nc3ccccc3n4
InChi:InChI=1S/C14H10N4O2/c19-8-5-6-12-11(7-8)17-14(20)18(12)13-15-9-3-1-2-4-10(9)16-13/h1-7,19H,(H,15,16)(H,17,20)
Definition date:2015-05-13
Last modified:2016-07-15
Release date:2016-07-20
Identifier:5-hydroxy-1'H-1,2'-bibenzimidazol-2(3H)-one
8VI
8VI
Name:N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide
Formula:C24 H31 N5 O3
SMILES:CCN(C(=O)c1ccccc1OC)c2cc3N(C)C(=O)N(C)c3cc2N4CCNC[CH]4C
InChi:InChI=1S/C24H31N5O3/c1-6-28(23(30)17-9-7-8-10-22(17)32-5)20-13-18-19(27(4)24(31)26(18)3)14-21(20)29-12-11-25-15-16(29)2/h7-10,13-14,16,25H,6,11-12,15H2,1-5H3/t16-/m1/s1
Definition date:2016-05-16
Last modified:2016-07-01
Release date:2016-07-06
Identifier:N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide
LF1
LF1
Name:N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-2-methoxy-benzamide
Formula:C22 H27 N5 O3
SMILES:COc1ccccc1C(=O)Nc2cc3N(C)C(=O)N(C)c3cc2N4CCNC[CH]4C
InChi:InChI=1S/C22H27N5O3/c1-14-13-23-9-10-27(14)17-12-19-18(25(2)22(29)26(19)3)11-16(17)24-21(28)15-7-5-6-8-20(15)30-4/h5-8,11-12,14,23H,9-10,13H2,1-4H3,(H,24,28)/t14-/m1/s1
Definition date:2016-05-16
Last modified:2016-07-01
Release date:2016-07-06
Identifier:N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-2-methoxy-benzamide
6DT
6DT
Name:N-(4-((5-methyl-5H-pyrrolo[3,2-d]pyrimidin-4-yl)oxy)phenyl)-1H-benzimidazol-2-amine
Formula:C20 H16 N6 O
SMILES:Cn1ccc2ncnc(Oc3ccc(Nc4[nH]c5ccccc5n4)cc3)c12
InChi:InChI=1S/C20H16N6O/c1-26-11-10-17-18(26)19(22-12-21-17)27-14-8-6-13(7-9-14)23-20-24-15-4-2-3-5-16(15)25-20/h2-12H,1H3,(H2,23,24,25)
Definition date:2016-04-11
Last modified:2016-06-24
Release date:2016-06-29
Identifier:~{N}-[4-(5-methylpyrrolo[3,2-d]pyrimidin-4-yl)oxyphenyl]-1~{H}-benzimidazol-2-amine
6DW
6DW
Name:1-(cyclopropylmethyl)-5-(2-(2,3-dihydro-1H-imidazo[1,2-a]benzimidazol-1-yl)ethoxy)-3-(1-phenyl-1H-pyrazol-5-yl)pyridazin-4(1H)-one
Formula:C28 H27 N7 O2
SMILES:O=C1C(=CN(CC2CC2)N=C1c3ccnn3c4ccccc4)OCCN5CCn6c7ccccc7nc56
InChi:InChI=1S/C28H27N7O2/c36-27-25(37-17-16-32-14-15-34-23-9-5-4-8-22(23)30-28(32)34)19-33(18-20-10-11-20)31-26(27)24-12-13-29-35(24)21-6-2-1-3-7-21/h1-9,12-13,19-20H,10-11,14-18H2
Definition date:2016-04-11
Last modified:2016-06-24
Release date:2016-06-29
Identifier:1-(cyclopropylmethyl)-5-[2-(1,2-dihydroimidazo[1,2-a]benzimidazol-3-yl)ethoxy]-3-(2-phenylpyrazol-3-yl)pyridazin-4-one
62O
62O
Name:6-methoxy-2-(1H-pyrazol-5-yl)-1H-benzimidazole
Formula:C11 H10 N4 O
SMILES:c12c(ccc(OC)c1)nc(n2)c3ccnn3
InChi:InChI=1S/C11H10N4O/c1-16-7-2-3-8-10(6-7)14-11(13-8)9-4-5-12-15-9/h2-6H,1H3,(H,12,15)(H,13,14)
Definition date:2016-01-18
Last modified:2016-06-03
Release date:2016-06-08
Identifier:6-methoxy-2-(1H-pyrazol-5-yl)-1H-benzimidazole
8AA
8AA
Name:8-[acetyl(anthracen-2-yl)amino]-2'-deoxy-5'-O-(dihydroxyphosphanyl)guanosine
Formula:C26 H25 N6 O7 P
SMILES:P(OCC6C(CC(n5c1NC(=NC(c1nc5N(c4ccc3cc2ccccc2cc3c4)C(C)=O)=O)N)O6)O)(O)O
InChi:InChI=1S/C26H25N6O7P/c1-13(33)31(18-7-6-16-8-14-4-2-3-5-15(14)9-17(16)10-18)26-28-22-23(29-25(27)30-24(22)35)32(26)21-11-19(34)20(39-21)12-38-40(36)37/h2-10,19-21,34,36-37H,11-12H2,1H3,(H3,27,29,30,35)/t19-,20+,21+/m0/s1
Definition date:2016-05-13
Last modified:2016-05-27
Release date:2016-06-01
Identifier:8-[acetyl(anthracen-2-yl)amino]-2'-deoxy-5'-O-(dihydroxyphosphanyl)guanosine

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon