Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
1X4
1X4
Name:2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose
Formula:C5 H11 O6 P
SMILES:O=P(OCC1OC(O)CC1)(O)O
InChi:InChI=1S/C5H11O6P/c6-5-2-1-4(11-5)3-10-12(7,8)9/h4-6H,1-3H2,(H2,7,8,9)/t4-,5-/m0/s1
Synonyms:2,3-dideoxyribose-5-phosphate
Definition date:2013-07-22
Last modified:2020-07-17
Release date:2013-07-31
Identifier:[(2S,5S)-5-hydroxytetrahydrofuran-2-yl]methyl dihydrogen phosphate
TEU
TEU
Name:1-O-alpha-D-glucopyranosyl-D-fructose
Formula:C12 H22 O11
SMILES:O=C(COC1OC(C(O)C(O)C1O)CO)C(O)C(O)C(O)CO
InChi:InChI=1S/C12H22O11/c13-1-4(15)7(17)8(18)5(16)3-22-12-11(21)10(20)9(19)6(2-14)23-12/h4,6-15,17-21H,1-3H2/t4-,6-,7-,8-,9-,10+,11-,12+/m1/s1
Synonyms:1-O-alpha-D-glucosyl-D-fructose
Definition date:2012-10-04
Last modified:2020-07-17
Release date:2013-09-25
Identifier:1-O-alpha-D-glucopyranosyl-D-fructose
M3N
M3N
Name:4-(hydroxymethyl)-1-(alpha-D-mannopyranosyl)-1H-1,2,3-triazole
Formula:C9 H15 N3 O6
SMILES:n1nn(cc1CO)C2OC(C(O)C(O)C2O)CO
InChi:InChI=1S/C9H15N3O6/c13-2-4-1-12(11-10-4)9-8(17)7(16)6(15)5(3-14)18-9/h1,5-9,13-17H,2-3H2/t5-,6-,7+,8+,9+/m1/s1
Synonyms:4-(hydroxymethyl)-1-(alpha-D-mannosyl)-1H-1,2,3-triazole
Definition date:2014-05-02
Last modified:2020-07-17
Release date:2014-12-17
Identifier:4-(hydroxymethyl)-1-(alpha-D-mannopyranosyl)-1H-1,2,3-triazole
SLM
SLM
Name:(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxamide
Formula:C11 H20 N2 O8
SMILES:O=C(N)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1
InChi:InChI=1S/C11H20N2O8/c1-4(15)13-7-5(16)2-11(20,10(12)19)21-9(7)8(18)6(17)3-14/h5-9,14,16-18,20H,2-3H2,1H3,(H2,12,19)(H,13,15)/t5-,6+,7+,8+,9+,11-/m0/s1
Synonyms:SIALYLAMIDE
Definition date:2010-11-04
Last modified:2020-07-17
Identifier:(2S,4S,5R,6R)-5-(acetylamino)-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-carboxamide (non-preferred name)
U97
U97
Name:2-O-sulfo-beta-L-galactopyranuronic acid
Formula:C6 H10 O10 S
SMILES:C1(C(C(=O)O)OC(O)C(C1O)OS(O)(=O)=O)O
InChi:InChI=1S/C6H10O10S/c7-1-2(8)4(16-17(12,13)14)6(11)15-3(1)5(9)10/h1-4,6-8,11H,(H,9,10)(H,12,13,14)/t1-,2+,3+,4-,6-/m0/s1
Definition date:2020-05-04
Last modified:2020-07-17
Release date:2020-07-29
Identifier:2-O-sulfo-beta-L-galactopyranuronic acid
TUG
TUG
Name:3,4-di-O-sulfo-alpha-D-altropyranose
Formula:C6 H12 O12 S2
SMILES:OCC1OC(C(C(C1OS(=O)(O)=O)OS(=O)(O)=O)O)O
InChi:InChI=1S/C6H12O12S2/c7-1-2-4(17-19(10,11)12)5(18-20(13,14)15)3(8)6(9)16-2/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3+,4-,5+,6+/m1/s1
Definition date:2020-03-31
Last modified:2020-07-17
Release date:2020-07-29
Identifier:3,4-di-O-sulfo-alpha-D-altropyranose
TUJ
TUJ
Name:1,2,3,4-tetra-O-sulfo-alpha-D-allopyranose
Formula:C6 H12 O18 S4
SMILES:OCC1OC(C(C(C1OS(O)(=O)=O)OS(=O)(=O)O)OS(O)(=O)=O)OS(O)(=O)=O
InChi:InChI=1S/C6H12O18S4/c7-1-2-3(21-25(8,9)10)4(22-26(11,12)13)5(23-27(14,15)16)6(20-2)24-28(17,18)19/h2-7H,1H2,(H,8,9,10)(H,11,12,13)(H,14,15,16)(H,17,18,19)/t2-,3-,4-,5-,6-/m1/s1
Definition date:2020-03-31
Last modified:2020-07-17
Release date:2020-07-29
Identifier:1,2,3,4-tetra-O-sulfo-alpha-D-allopyranose
U9A
U9A
Name:[(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy)tetrahydro-2H-pyran-3-yl]sulfamic acid
Formula:C5 H11 N O11 S2
SMILES:C1(C(C(NS(O)(=O)=O)C(OC1OS(O)(=O)=O)O)O)O
InChi:InChI=1S/C5H11NO11S2/c7-2-1(6-18(10,11)12)4(9)16-5(3(2)8)17-19(13,14)15/h1-9H,(H,10,11,12)(H,13,14,15)/t1-,2-,3-,4-,5-/m1/s1
Definition date:2020-05-04
Last modified:2020-07-17
Release date:2020-07-29
Identifier:[(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy)tetrahydro-2H-pyran-3-yl]sulfamic acid (non-preferred name)
U9D
U9D
Name:4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose
Formula:C9 H18 O5
SMILES:C1C(OC(C(C1OC)OC)O)COC
InChi:InChI=1S/C9H18O5/c1-11-5-6-4-7(12-2)8(13-3)9(10)14-6/h6-10H,4-5H2,1-3H3/t6-,7-,8+,9?/m0/s1
Definition date:2020-05-05
Last modified:2020-07-17
Release date:2020-07-29
Identifier:4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose
U9G
U9G
Name:2,3-di-O-methyl-6-O-sulfo-alpha-D-glucopyranose
Formula:C8 H16 O9 S
SMILES:OC1C(OC(C(C1OC)OC)O)COS(O)(=O)=O
InChi:InChI=1S/C8H16O9S/c1-14-6-5(9)4(3-16-18(11,12)13)17-8(10)7(6)15-2/h4-10H,3H2,1-2H3,(H,11,12,13)/t4-,5-,6+,7-,8+/m1/s1
Definition date:2020-05-05
Last modified:2020-07-17
Release date:2020-07-29
Identifier:2,3-di-O-methyl-6-O-sulfo-alpha-D-glucopyranose
TUP
TUP
Name:3-deoxy-3-fluoro-alpha-D-glucopyranose
Formula:C6 H11 F O5
SMILES:FC1C(C(O)OC(C1O)CO)O
InChi:InChI=1S/C6H11FO5/c7-3-4(9)2(1-8)12-6(11)5(3)10/h2-6,8-11H,1H2/t2-,3+,4-,5-,6+/m1/s1
Definition date:2020-03-31
Last modified:2020-07-17
Release date:2020-07-29
Identifier:3-deoxy-3-fluoro-alpha-D-glucopyranose
LAH
LAH
Name:2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose
Formula:C8 H17 O8 P
SMILES:O=P(OC1C(O)C(O)COC1O)(OC(C)C)O
InChi:InChI=1S/C8H17O8P/c1-4(2)15-17(12,13)16-7-6(10)5(9)3-14-8(7)11/h4-11H,3H2,1-2H3,(H,12,13)/t5-,6-,7+,8+/m0/s1
Synonyms:2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinose
Definition date:2014-03-11
Last modified:2020-07-17
Release date:2015-08-19
Identifier:2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose
U9J
U9J
Name:(2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol
Formula:C8 H16 O7
SMILES:OC1C(OC(C(C1OC)OC)O)C(O)O
InChi:InChI=1S/C8H16O7/c1-13-4-3(9)5(7(10)11)15-8(12)6(4)14-2/h3-12H,1-2H3/t3-,4-,5+,6+,8+/m0/s1
Definition date:2020-05-05
Last modified:2020-07-17
Release date:2020-07-29
Identifier:(2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol (non-preferred name)
U9M
U9M
Name:(2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol
Formula:C8 H16 O7
SMILES:OC1C(OC(C(C1OC)OC)O)C(O)O
InChi:InChI=1S/C8H16O7/c1-13-4-3(9)5(7(10)11)15-8(12)6(4)14-2/h3-12H,1-2H3/t3-,4-,5-,6+,8+/m0/s1
Definition date:2020-05-05
Last modified:2020-07-17
Release date:2020-07-29
Identifier:(2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol (non-preferred name)
PDX
PDX
Name:2,3-di-O-sulfo-alpha-D-glucopyranose
Formula:C6 H12 O12 S2
SMILES:O=S(=O)(O)OC1C(O)C(OC(O)C1OS(=O)(=O)O)CO
InChi:InChI=1S/C6H12O12S2/c7-1-2-3(8)4(17-19(10,11)12)5(6(9)16-2)18-20(13,14)15/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3-,4+,5-,6+/m1/s1
Synonyms:2,3-di-O-sulfo-alpha-D-glucose
Definition date:2002-10-23
Last modified:2020-07-17
Identifier:2,3-di-O-sulfo-alpha-D-glucopyranose
TVD
TVD
Name:N-acetyl-2-(acetylamino)-2-deoxy-beta-D-glucopyranosylamine
Formula:C10 H18 N2 O6
SMILES:O=C(C)NC1C(O)C(O)C(OC1NC(C)=O)CO
InChi:InChI=1S/C10H18N2O6/c1-4(14)11-7-9(17)8(16)6(3-13)18-10(7)12-5(2)15/h6-10,13,16-17H,3H2,1-2H3,(H,11,14)(H,12,15)/t6-,7-,8-,9-,10-/m1/s1
Definition date:2020-04-01
Last modified:2020-07-17
Release date:2020-07-29
Identifier:N-acetyl-2-(acetylamino)-2-deoxy-beta-D-glucopyranosylamine
TFU
TFU
Name:methyl 1-seleno-beta-L-fucopyranoside
Formula:C7 H14 O4 Se
SMILES:C[Se][CH]1O[CH](C)[CH](O)[CH](O)[CH]1O
InChi:InChI=1S/C7H14O4Se/c1-3-4(8)5(9)6(10)7(11-3)12-2/h3-10H,1-2H3/t3-,4+,5+,6-,7+/m0/s1
Synonyms:(2S,3S,4R,5S,6R)-2-methyl-6-methylselanyl-oxane-3,4,5-triol
Definition date:2015-11-12
Last modified:2020-07-17
Release date:2016-06-29
Identifier:(2~{S},3~{S},4~{R},5~{S},6~{R})-2-methyl-6-methylselanyl-oxane-3,4,5-triol
TVG
TVG
Name:propyl beta-D-galactofuranoside
Formula:C9 H18 O6
SMILES:OC1C(OC(C1O)OCCC)C(CO)O
InChi:InChI=1S/C9H18O6/c1-2-3-14-9-7(13)6(12)8(15-9)5(11)4-10/h5-13H,2-4H2,1H3/t5-,6-,7-,8+,9-/m1/s1
Definition date:2020-04-01
Last modified:2020-07-17
Release date:2020-07-29
Identifier:propyl beta-D-galactofuranoside
TVM
TVM
Name:3-O-[(3-methoxyphenyl)methyl]-beta-D-galactopyranose
Formula:C14 H20 O7
SMILES:C2(O)C(OCc1cc(ccc1)OC)C(C(OC2CO)O)O
InChi:InChI=1S/C14H20O7/c1-19-9-4-2-3-8(5-9)7-20-13-11(16)10(6-15)21-14(18)12(13)17/h2-5,10-18H,6-7H2,1H3/t10-,11+,12-,13+,14-/m1/s1
Definition date:2020-04-01
Last modified:2020-07-17
Release date:2020-07-29
Identifier:3-O-[(3-methoxyphenyl)methyl]-beta-D-galactopyranose
TVS
TVS
Name:prop-2-en-1-yl 2-(acetylamino)-2-deoxy-beta-D-glucopyranoside
Formula:C11 H19 N O6
SMILES:CC(=O)NC1C(OC[C@H]=C)OC(CO)C(C1O)O
InChi:InChI=1S/C11H19NO6/c1-3-4-17-11-8(12-6(2)14)10(16)9(15)7(5-13)18-11/h3,7-11,13,15-16H,1,4-5H2,2H3,(H,12,14)/t7-,8-,9-,10-,11-/m1/s1
Definition date:2020-04-01
Last modified:2020-07-17
Release date:2020-07-29
Identifier:prop-2-en-1-yl 2-(acetylamino)-2-deoxy-beta-D-glucopyranoside
M55
M55
Name:benzyl alpha-D-glucopyranuronate
Formula:C13 H16 O7
SMILES:O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(=O)OCc2ccccc2
InChi:InChI=1S/C13H16O7/c14-8-9(15)11(20-12(17)10(8)16)13(18)19-6-7-4-2-1-3-5-7/h1-5,8-12,14-17H,6H2/t8-,9-,10+,11-,12-/m0/s1
Synonyms:Benzyl D-glucuronoate
Definition date:2019-10-03
Last modified:2020-07-17
Release date:2019-11-27
Identifier:(phenylmethyl) (2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxane-2-carboxylate
TVV
TVV
Name:3-O-prop-2-yn-1-yl-beta-D-galactopyranose
Formula:C9 H14 O6
SMILES:C1(O)C(O)C(C(C(O1)CO)O)OCC#C
InChi:InChI=1S/C9H14O6/c1-2-3-14-8-6(11)5(4-10)15-9(13)7(8)12/h1,5-13H,3-4H2/t5-,6+,7-,8+,9-/m1/s1
Definition date:2020-04-01
Last modified:2020-07-17
Release date:2020-07-29
Identifier:3-O-prop-2-yn-1-yl-beta-D-galactopyranose
RF5
RF5
Name:2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose
Formula:C5 H10 F O7 P
SMILES:FC1C(O)C(OC1O)COP(=O)(O)O
InChi:InChI=1S/C5H10FO7P/c6-3-4(7)2(13-5(3)8)1-12-14(9,10)11/h2-5,7-8H,1H2,(H2,9,10,11)/t2-,3+,4-,5+/m1/s1
Synonyms:Inhibitor arabinosyl-2-fluoro-2-deoxynicotinamide mononucleotide, bound form
Definition date:2008-07-30
Last modified:2020-07-17
Identifier:2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose
SN5
SN5
Name:2-deoxy-2-(ethanethioylamino)-beta-D-glucopyranose
Formula:C8 H15 N O5 S
SMILES:S=C(NC1C(O)C(O)C(OC1O)CO)C
InChi:InChI=1S/C8H15NO5S/c1-3(15)9-5-7(12)6(11)4(2-10)14-8(5)13/h4-8,10-13H,2H2,1H3,(H,9,15)/t4-,5-,6-,7-,8-/m1/s1
Synonyms:N-ethanethioyl-beta-D-glucosamine
Definition date:2009-06-04
Last modified:2020-07-17
Identifier:2-deoxy-2-(ethanethioylamino)-beta-D-glucopyranose
MXY
MXY
Name:2-O-methyl-beta-L-fucopyranose
Formula:C7 H14 O5
SMILES:O(C)C1C(O)C(O)C(OC1O)C
InChi:InChI=1S/C7H14O5/c1-3-4(8)5(9)6(11-2)7(10)12-3/h3-10H,1-2H3/t3-,4+,5+,6-,7-/m0/s1
Synonyms:2-O-METHYL FUCOSE
Definition date:1999-11-08
Last modified:2020-07-17
Identifier:6-deoxy-2-O-methyl-beta-L-galactopyranose

243911

PDB entries from 2025-10-29

PDB statisticsPDBj update infoContact PDBjnumon