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6OWE

Enoyl-CoA carboxylases/reductases in complex with ethylmalonyl CoA

Summary for 6OWE
Entry DOI10.2210/pdb6owe/pdb
DescriptorCrotonyl-CoA carboxylase/reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 5'-O-[(S)-{[(S)-[(3R)-4-({(1E)-3-[(2-{[(2S)-2-carboxybutanoyl]sulfanyl}ethyl)amino]-3-oxoprop-1-en-1-yl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine 3'-(dihydrogen phosphate), ... (5 entities in total)
Functional Keywordsecr, highly efficient co2-fixing enzyme, oxidoreductase
Biological sourceKitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054)
Total number of polymer chains4
Total formula weight201907.07
Authors
DeMirci, H. (deposition date: 2019-05-09, release date: 2019-06-26, Last modification date: 2024-03-13)
Primary citationStoffel, G.M.M.,Saez, D.A.,DeMirci, H.,Vogeli, B.,Rao, Y.,Zarzycki, J.,Yoshikuni, Y.,Wakatsuki, S.,Vohringer-Martinez, E.,Erb, T.J.
Four amino acids define the CO2binding pocket of enoyl-CoA carboxylases/reductases.
Proc.Natl.Acad.Sci.USA, 116:13964-13969, 2019
Cited by
PubMed Abstract: Carboxylases are biocatalysts that capture and convert carbon dioxide (CO) under mild conditions and atmospheric concentrations at a scale of more than 400 Gt annually. However, how these enzymes bind and control the gaseous CO molecule during catalysis is only poorly understood. One of the most efficient classes of carboxylating enzymes are enoyl-CoA carboxylases/reductases (Ecrs), which outcompete the plant enzyme RuBisCO in catalytic efficiency and fidelity by more than an order of magnitude. Here we investigated the interactions of CO within the active site of Ecr from Combining experimental biochemistry, protein crystallography, and advanced computer simulations we show that 4 amino acids, N81, F170, E171, and H365, are required to create a highly efficient CO-fixing enzyme. Together, these 4 residues anchor and position the CO molecule for the attack by a reactive enolate created during the catalytic cycle. Notably, a highly ordered water molecule plays an important role in an active site that is otherwise carefully shielded from water, which is detrimental to CO fixation. Altogether, our study reveals unprecedented molecular details of selective CO binding and C-C-bond formation during the catalytic cycle of nature's most efficient CO-fixing enzyme. This knowledge provides the basis for the future development of catalytic frameworks for the capture and conversion of CO in biology and chemistry.
PubMed: 31243147
DOI: 10.1073/pnas.1901471116
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (1.72 Å)
Structure validation

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