9R6Z

Cubic state of the F420-reducing hydrogenase from Methanothermococcus thermolithotrophicus

Summary for 9R6Z

• Entry DOI: 10.2210/pdb9r6z/pdb
• Descriptor: F420-reducing [NiFe]-hydrogenase subunit alpha, F420-reducing [NiFe]-hydrogenase subunit beta, F420-reducing [NiFe]-hydrogenase subunit gamma, ... (9 entities in total)
• Functional Keywords: [nife]-hydrogenase, redox cycle, catalysis, [4fe-4s]-cluster, f420 cofactor, fad, hydrogen activation, thermophilic methanogen, oxidoreductase
• Biological source: Methanothermococcus thermolithotrophicus DSM 2095; More
• Total number of polymer chains: 12
• Total formula weight: 424857.81

Authors

Jespersen, M.,Lemaire, O.N.,Wagner, T. (deposition date: 2025-05-13, release date: 2025-10-22)

Primary citation

Jespersen, M.,Lorent, C.,Lemaire, O.N.,Zebger, I.,Wagner, T.
Structural and Spectroscopic Insights into Catalytic Intermediates of a [NiFe]-hydrogenase from Group 3.
Chembiochem, :e202500692-e202500692, 2025

PubMed Abstract: Hydrogenases catalyze reversible H production and are potential models for renewable energy catalysts. Here, the full redox landscape of a group 3 [NiFe]-hydrogenase from methanothermococcus thermolithotrophicus is elucidated, resembling group 1 enzymes. Structural and spectroscopic analyses reveal a catalytic-ready state with nickel seesaw coordination, enabling intermediate trapping and advancing mechanistic understanding of oxygen-sensitive [NiFe] enzymes.

PubMed: 41078086
DOI: 10.1002/cbic.202500692

Experimental method

X-RAY DIFFRACTION (2.85 Å)