9K20

Cryo-EM structure of ATP-bound P2Y purinoceptor 2-miniGo-scFv16 complex

9K20 の概要

• エントリーDOI: 10.2210/pdb9k20/pdb
• EMDBエントリー: 61986
• 分子名称: P2Y purinoceptor 2, Guanine nucleotide-binding protein G(o) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... (6 entities in total)
• 機能のキーワード: g protein-coupled receptors, g-protein signaling, nucleotide receptors, membrane protein
• 由来する生物種: Homo sapiens (human); 詳細
• タンパク質・核酸の鎖数: 5
• 化学式量合計: 150873.33

構造登録者

Lan, B.,Zhang, S.,Liu, X.,Lin, B. (登録日: 2024-10-16, 公開日: 2025-06-11, 最終更新日: 2025-07-16)

主引用文献

Lan, B.,Zhang, S.,Chen, K.,Dai, S.,Fei, J.,Gao, K.,Sun, X.,Lin, B.,Liu, X.
Structural insight into the self-activation and G-protein coupling of P2Y2 receptor.
Cell Discov, 11:47-47, 2025

PubMed Abstract: Purinergic P2Y2 receptor (P2Y2R) represents a typically extracellular ATP and UTP sensor for mediating purinergic signaling. Despite its importance as a pharmacological target, the molecular mechanisms underlying ligand recognition and G-protein coupling have remained elusive due to lack of structural information. In this study, we determined the cryo-electron microscopy (cryo-EM) structures of the apo P2Y2R in complex with G, ATP-bound P2Y2R in complex with G or G, and UTP-bound P2Y4R in complex with G. These structures reveal the similarities and distinctions of ligand recognition within the P2Y receptor family. Furthermore, a comprehensive analysis of G-protein coupling reveals that P2Y2R exhibits promiscuity in coupling with both G and G proteins. Combining molecular dynamics simulations and signaling assays, we elucidate the molecular mechanisms by which P2Y2R differentiates pathway-specific G or G coupling through distinct structural components on the intracellular side. Strikingly, we identify a helix-like segment within the N-terminus that occupies the orthosteric ligand-binding pocket of P2Y2R, accounting for its self-activation. Taken together, these findings provide a molecular framework for understanding the activation mechanism of P2Y2R, encompassing ligand recognition, G-protein coupling, and a novel N-terminus-mediated self-activation mechanism.

PubMed: 40360475
DOI: 10.1038/s41421-025-00797-x

実験手法

ELECTRON MICROSCOPY (2.65 Å)