9DRH

Crystal structure of Tet(X7) bound to anhydrotetracycline C10-benzoate ester

This is a non-PDB format compatible entry.

Summary for 9DRH

• Entry DOI: 10.2210/pdb9drh/pdb
• Descriptor: Tet(X7), (6aS,7S,10aS)-9-carbamoyl-7-(dimethylamino)-8,10a,12-trihydroxy-5-methyl-10,11-dioxo-6,6a,7,10,10a,11-hexahydrotetracen-1-yl pyrimidine-2-carboxylate, FLAVIN-ADENINE DINUCLEOTIDE (3 entities in total)
• Functional Keywords: inhibitor, oxidoreductase, oxidoreductase-inhibitor complex, oxidoreductase/inhibitor
• Biological source: Pseudomonas aeruginosa
• Total number of polymer chains: 1
• Total formula weight: 46221.82

Authors

Tang, W.K.,Tolia, N.H. (deposition date: 2024-09-25, release date: 2025-03-05, Last modification date: 2025-03-26)

Primary citation

Williford, E.E.,Xue, Y.P.,Tang, W.K.,Li, R.,Jones, K.V.,Blake, K.S.,Blaine, H.C.,Lian, X.,Stallings, C.L.,Tolia, N.H.,Dantas, G.,Wencewicz, T.A.
C10-Benzoate Esters of Anhydrotetracycline Inhibit Tetracycline Destructases and Recover Tetracycline Antibacterial Activity.
Acs Infect Dis., 11:738-749, 2025

PubMed Abstract: Tetracyclines (TCs) are an important class of antibiotics threatened by enzymatic inactivation. These tetracycline-inactivating enzymes, also known as tetracycline destructases (TDases), are a subfamily of class A flavin monooxygenases (FMOs) that catalyze hydroxyl group transfer and oxygen insertion (Baeyer-Villiger type) reactions on TC substrate scaffolds. Semisynthetic modification of TCs (e.g., tigecycline, omadacycline, eravacycline, and sarecycline) has proven effective in evading certain resistance mechanisms, such as ribosomal protection and efflux, but does not protect against TDase-mediated resistance. Here, we report the design, synthesis, and evaluation of a new series of 22 semisynthetic TDase inhibitors that explore D-ring substitution of anhydrotetracycline (aTC) including 14 C10-benzoate ester and eight C9-benzamides. Overall, the C10-benzoate esters displayed enhanced bioactivity and water solubility compared to the corresponding C9-benzamides featuring the same heterocyclic aryl side chains. The C10-benzoate ester derivatives of aTC were prepared in a high-yield one-step synthesis without the need for protecting groups. The C10-esters are water-soluble, stable toward hydrolysis, and display dose-dependent rescue of tetracycline antibiotic activity in expressing two types of tetracycline destructases, represented by TetX7 (Type 1) and Tet50 (Type 2). The best inhibitors recovered tetracycline antibiotic activity at concentrations as low as 2 μM, producing synergistic scores <0.5 in the fractional inhibitory concentration index (FICI) against TDase-expressing strains of and clinical . The C10-benzoate ester derivatives of aTC reported here are promising new leads for the development of tetracycline drug combination therapies to overcome TDase-mediated antibiotic resistance.

PubMed: 39912785
DOI: 10.1021/acsinfecdis.4c00912

Experimental method

X-RAY DIFFRACTION (3.3 Å)