9C6T

Structure of the Human ISM1 TSR-AMOP domains

Summary for 9C6T

• Entry DOI: 10.2210/pdb9c6t/pdb
• Descriptor: Isthmin-1, alpha-D-mannopyranose (2 entities in total)
• Functional Keywords: throspondin repeat domain, amop domain, adipokine, unknown function
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 2
• Total formula weight: 56839.60

Authors

Stayrook, S.,Li, T.,Klein, D.E. (deposition date: 2024-06-08, release date: 2025-04-23, Last modification date: 2025-11-05)

Primary citation

Li, T.,Stayrook, S.E.,Li, W.,Wang, Y.,Li, H.,Zhang, J.,Liu, Y.,Klein, D.E.
Crystal structure of Isthmin-1 and reassessment of its functional role in pre-adipocyte signaling.
Nat Commun, 16:3580-3580, 2025

PubMed Abstract: Isthmin-1 (ISM1) is a recently described adipokine with insulin-like properties that can control hyperglycemia and liver steatosis. Additionally, ISM1 is proposed to play critical roles in patterning, angiogenesis, vascular permeability, and apoptosis. A key feature of ISM1 is its AMOP (adhesion-associated domain in MUC4 (Mucin-4) and other proteins) domain which is essential for many of its functions. However, the molecular details of AMOP domains remain elusive as there are no descriptions of their structure. Here we determined the crystal structure of ISM1 including its thrombospondin type I repeat (TSR) and AMOP domain. Interestingly, ISM1's AMOP domain exhibits a distinct fold with similarities to bacterial streptavidin. When comparing our structure to predicted structures of other AMOP domains, we observed that while the core streptavidin-like barrel is conserved, the surface helices and loops vary greatly. Thus, the AMOP domain fold allows for structural plasticity that may underpin its diverse functions. Furthermore, and contrary to prior studies, we show that highly purified ISM1 does not stimulate AKT phosphorylation on 3T3-F442A pre-adipocytes. Rather, we find that co-purifying growth factors are responsible for this activity. Together, our data reveal the structure and clarify functional studies of this enigmatic protein.

PubMed: 40234450
DOI: 10.1038/s41467-025-58828-w

Experimental method

X-RAY DIFFRACTION (3.41 Å)