9EYQ

The structure of nonameric pore of RN1 variant of actinoporin Fav

This is a non-PDB format compatible entry.

Summary for 9EYQ

• Entry DOI: 10.2210/pdb9eyq/pdb
• Related: 9EYL 9EYM 9EYP
• EMDB information: 50062
• Descriptor: Actinoporin, Sphingomyelin C18 (2 entities in total)
• Functional Keywords: actinoporin, pore-forming toxin, pore, nonamer, transmembrane pore, toxin, protein nanopore
• Biological source: Orbicella faveolata
• Total number of polymer chains: 9
• Total formula weight: 224711.89

Authors

Solinc, G.,Srnko, M.,Anderluh, G.,Crnkovic, A.,Podobnik, M. (deposition date: 2024-04-09, release date: 2025-04-23, Last modification date: 2026-05-27)

Primary citation

Srnko, M.,Solinc, G.,Crnkovic, A.,Merzel, F.,Jordan, M.,Wallace, E.J.,Podobnik, M.,Anderluh, G.
High-Throughput Human Histone Detection by an Engineered Actinoporin Nanopore.
ACS Sens, 11:2016-2029, 2026

PubMed Abstract: The use of protein nanopores has proven to be very promising for the identification of proteins or the sequencing of peptides. However, their widespread use in biosensor applications is limited by more complex molecular properties of proteins in comparison to nucleic acids. Here, we developed an α-helical Fav nanopore from the coral Orbicella faveolata to detect human histones using a commercial MinION device. The engineered nanopores showed stable insertion into the polymeric membrane support. Bulk analysis of several tens to hundreds of pores per measurement revealed significant differences in mean current passing the pore and current noise resulting from capturing different full-length human histones or their post-translationally modified variants into the pore lumen. Importantly, detailed blocking analyses confirmed histone-specific signals that allow further discrimination between two medically important extracellular histones in mixtures. The newly developed Fav nanopore and high-throughput approach for the detection of biomedically important proteins is an important step towards the widespread use of nanopores in modern analytics.

PubMed: 41718555
DOI: 10.1021/acssensors.5c03533

Experimental method

ELECTRON MICROSCOPY (3.28 Å)