8JLB

Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant

8JLB の概要

• エントリーDOI: 10.2210/pdb8jlb/pdb
• EMDBエントリー: 36391
• 分子名称: Histone H3.2, Histone H4, Histone H2A type 1-B/E, ... (6 entities in total)
• 機能のキーワード: nuclear protein, chromatin, gene regulation-dna complex, gene regulation/dna
• 由来する生物種: Homo sapiens (human); 詳細
• タンパク質・核酸の鎖数: 10
• 化学式量合計: 200711.81

構造登録者

Oishi, T.,Hatazawa, S.,Kujirai, T.,Kato, J.,Kobayashi, Y.,Ogasawara, M.,Akatsu, M.,Takizawa, Y.,Kurumizaka, H. (登録日: 2023-06-02, 公開日: 2023-10-04, 最終更新日: 2023-11-08)

主引用文献

Oishi, T.,Hatazawa, S.,Kujirai, T.,Kato, J.,Kobayashi, Y.,Ogasawara, M.,Akatsu, M.,Ehara, H.,Sekine, S.I.,Hayashi, G.,Takizawa, Y.,Kurumizaka, H.
Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51:10364-10374, 2023

PubMed Abstract: The N-terminal tails of histones protrude from the nucleosome core and are target sites for histone modifications, such as acetylation and methylation. Histone acetylation is considered to enhance transcription in chromatin. However, the contribution of the histone N-terminal tail to the nucleosome transcription by RNA polymerase II (RNAPII) has not been clarified. In the present study, we reconstituted nucleosomes lacking the N-terminal tail of each histone, H2A, H2B, H3 or H4, and performed RNAPII transcription assays. We found that the N-terminal tail of H3, but not H2A, H2B and H4, functions in RNAPII pausing at the SHL(-5) position of the nucleosome. Consistently, the RNAPII transcription assay also revealed that the nucleosome containing N-terminally acetylated H3 drastically alleviates RNAPII pausing at the SHL(-5) position. In addition, the H3 acetylated nucleosome produced increased amounts of the run-off transcript. These results provide important evidence that the H3 N-terminal tail plays a role in RNAPII pausing at the SHL(-5) position of the nucleosome, and its acetylation directly alleviates this nucleosome barrier.

PubMed: 37718728
DOI: 10.1093/nar/gkad754

実験手法

ELECTRON MICROSCOPY (2.36 Å)