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8GLG

Crystal Structure of Human CD1b in Complex with Phosphatidylethanolamine C34:1

8GLG の概要
エントリーDOI10.2210/pdb8glg/pdb
分子名称T-cell surface glycoprotein CD1b, 1,2-ETHANEDIOL, Beta-2-microglobulin, ... (11 entities in total)
機能のキーワードimmune system, lipid, cd1b, phosphatidylethanolamine, pe
由来する生物種Homo sapiens (human)
詳細
タンパク質・核酸の鎖数2
化学式量合計49494.68
構造登録者
Shahine, A. (登録日: 2023-03-22, 公開日: 2023-09-20, 最終更新日: 2024-10-16)
主引用文献Huang, S.,Shahine, A.,Cheng, T.Y.,Chen, Y.L.,Ng, S.W.,Balaji, G.R.,Farquhar, R.,Gras, S.,Hardman, C.S.,Altman, J.D.,Tahiri, N.,Minnaard, A.J.,Ogg, G.S.,Mayfield, J.A.,Rossjohn, J.,Moody, D.B.
CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms.
Cell, 186:4583-4596.e13, 2023
Cited by
PubMed Abstract: The CD1 system binds lipid antigens for display to T cells. Here, we solved lipidomes for the four human CD1 antigen-presenting molecules, providing a map of self-lipid display. Answering a basic question, the detection of >2,000 CD1-lipid complexes demonstrates broad presentation of self-sphingolipids and phospholipids. Whereas peptide antigens are chemically processed, many lipids are presented in an unaltered form. However, each type of CD1 protein differentially edits the self-lipidome to show distinct capture motifs based on lipid length and chemical composition, suggesting general antigen display mechanisms. For CD1a and CD1d, lipid size matches the CD1 cleft volume. CD1c cleft size is more variable, and CD1b is the outlier, where ligands and clefts show an extreme size mismatch that is explained by uniformly seating two small lipids in one cleft. Furthermore, the list of compounds that comprise the integrated CD1 lipidome supports the ongoing discovery of lipid blockers and antigens for T cells.
PubMed: 37725977
DOI: 10.1016/j.cell.2023.08.022
主引用文献が同じPDBエントリー
実験手法
X-RAY DIFFRACTION (1.6 Å)
構造検証レポート
Validation report summary of 8glg
検証レポート(詳細版)ダウンロードをダウンロード

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件を2025-07-30に公開中

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