8GDC

Cryo-EM Structure of the Prostaglandin E2 Receptor 3 Coupled to G Protein

Summary for 8GDC

• Entry DOI: 10.2210/pdb8gdc/pdb
• EMDB information: 29943 29944 29945 29946
• Descriptor: Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein subunit gamma, ... (5 entities in total)
• Functional Keywords: gpcr complex, signaling protein
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 4
• Total formula weight: 135678.22

Authors

Shenming, H.,Mengyao, X.,Lei, L.,Yang, D.,Shiyi, G.,Jinpeng, S. (deposition date: 2023-03-03, release date: 2024-01-10, Last modification date: 2024-10-16)

Primary citation

Huang, S.M.,Xiong, M.Y.,Liu, L.,Mu, J.,Wang, M.W.,Jia, Y.L.,Cai, K.,Tie, L.,Zhang, C.,Cao, S.,Wen, X.,Wang, J.L.,Guo, S.C.,Li, Y.,Qu, C.X.,He, Q.T.,Cai, B.Y.,Xue, C.,Gan, S.,Xie, Y.,Cong, X.,Yang, Z.,Kong, W.,Li, S.,Li, Z.,Xiao, P.,Yang, F.,Yu, X.,Guan, Y.F.,Zhang, X.,Liu, Z.,Yang, B.X.,Du, Y.,Sun, J.P.
Single hormone or synthetic agonist induces G s /G i coupling selectivity of EP receptors via distinct binding modes and propagating paths.
Proc.Natl.Acad.Sci.USA, 120:e2216329120-e2216329120, 2023

PubMed Abstract: To accomplish concerted physiological reactions, nature has diversified functions of a single hormone at at least two primary levels: 1) Different receptors recognize the same hormone, and 2) different cellular effectors couple to the same hormone-receptor pair [R.P. Xiao, , re15 (2001); L. Hein, J. D. Altman, B.K. Kobilka, , 181-184 (1999); Y. Daaka, L. M. Luttrell, R. J. Lefkowitz, , 88-91 (1997)]. Not only these questions lie in the heart of hormone actions and receptor signaling but also dissecting mechanisms underlying these questions could offer therapeutic routes for refractory diseases, such as kidney injury (KI) or X-linked nephrogenic diabetes insipidus (NDI). Here, we identified that G-biased signaling, but not G activation downstream of EP4, showed beneficial effects for both KI and NDI treatments. Notably, by solving Cryo-electron microscope (cryo-EM) structures of EP3-G, EP4-G, and EP4-G in complex with endogenous prostaglandin E (PGE)or two synthetic agonists and comparing with PGE-EP2-G structures, we found that unique primary sequences of prostaglandin E2 receptor (EP) receptors and distinct conformational states of the EP4 ligand pocket govern the G/G transducer coupling selectivity through different structural propagation paths, especially via TM6 and TM7, to generate selective cytoplasmic structural features. In particular, the orientation of the PGE ω-chain and two distinct pockets encompassing agonist L902688 of EP4 were differentiated by their G/G coupling ability. Further, we identified common and distinct features of cytoplasmic side of EP receptors for G/G coupling and provide a structural basis for selective and biased agonist design of EP4 with therapeutic potential.

PubMed: 37478163
DOI: 10.1073/pnas.2216329120

Experimental method

ELECTRON MICROSCOPY (3.5 Å)